CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G043780.1	Barley	mitochondrion, nucleus	13.01	63.33
GSMUA_Achr4P23240_001	Banana	nucleus	25.34	50.68
TraesCS5B01G406100.1	Wheat	nucleus	39.04	41.45
CDX90106	Canola	nucleus	29.79	40.85
CDY15706	Canola	nucleus	28.42	39.15
TraesCS5A01G401300.1	Wheat	nucleus	37.33	37.72
TraesCS5D01G411600.1	Wheat	nucleus	38.36	37.33
CDX84906	Canola	nucleus	31.16	37.3
CDY27630	Canola	nucleus	30.82	37.19
Bra032846.1-P	Field mustard	nucleus	30.82	36.89
OQU83893	Sorghum	nucleus	30.48	36.78
HORVU5Hr1G097520.1	Barley	nucleus	36.3	36.3
CDY11768	Canola	nucleus	31.51	35.94
Bra010921.1-P	Field mustard	nucleus	31.51	35.94
CDY03948	Canola	cytosol	17.81	35.86
AT1G27740.1	Thale cress	nucleus	30.82	34.88
EER91225	Sorghum	nucleus	35.27	34.33
Bra030063.1-P	Field mustard	nucleus	29.79	34.12
AT5G43175.1	Thale cress	nucleus	26.03	34.08
CDY11802	Canola	nucleus	26.37	33.48
GSMUA_Achr9P09600_001	Banana	nucleus	31.16	32.97
KXG39918	Sorghum	nucleus	35.62	32.3
EES17296	Sorghum	nucleus	33.9	31.33
EER99632	Sorghum	nucleus	28.42	29.43
EES00435	Sorghum	nucleus	20.89	21.03
EES07381	Sorghum	nucleus	19.86	18.95
EES15124	Sorghum	nucleus	15.07	16.36
EER96848	Sorghum	nucleus	13.7	15.33
CDY03946	Canola	nucleus	12.33	13.09
EES14382	Sorghum	nucleus	15.41	12.93
KXG33221	Sorghum	nucleus	18.49	12.92
EES18589	Sorghum	nucleus	17.47	12.72
OQU87789	Sorghum	cytosol	6.16	12.59
OQU87026	Sorghum	nucleus	14.04	8.89

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:8083975	UniProt:C5X030	EnsemblPlants:EER93400	ProteinID:EER93400
ProteinID:EER93400.1	GO:GO:0001046	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF99	SMART:SM00353	EnsemblPlantsGene:SORBI_3001G079300
SUPFAM:SSF47459	UniParc:UPI0001A82CBC	RefSeq:XP_002466402.1	InterPro:bHLH_dom	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:6097822..6101750

Molecular Weight (calculated)

31696.6 Da

IEP (calculated)

6.624

GRAVY (calculated)

-0.813

Length

292 amino acids

Sequence
(BLAST)

001: MSQAELAAWL ESQDAHWCSQ YQPAPAPALD EESEIVAQFL AAPYPYQLND DGGQEQQKRH HELGLGVVSA TTSATYCPEP CNVTGPGAAD ASNSNSSARG
101: TGAYFDSSGC TLVDDLIPAE PSPPQPKRKV RASRDGEDLG RHKKKSRASD NKHETKAASE TSQKCSQESS QQSRGSCSGD ESNYSDVNRR SGAHGGSGGN
201: AKAQAAKGSA TDPQSLYARR RRERINERLK ILQKLVPNGT KVDISTMLEE AVHYVRFLQQ QIKMLSSDEM WMYAPIAYNG MSLGIDMKIS PQ

Best Arabidopsis Sequence Match ( AT2G14760.1 )
(BLAST)

001: MEAMGEWSTG LGGIYTEEAD FMNQLLASYE QPCGGSSSET TATLTAYHHQ GSQWNGGFCF SQESSSYSGY CAAMPRQEED NNGMEDATIN TNLYLVGEET
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR

Arabidopsis Description

Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IGG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.