CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038863_P001	Maize	nucleus	78.05	79.04
GSMUA_Achr1P14400_001	Banana	nucleus	21.95	52.69
TraesCS1D01G367700.1	Wheat	nucleus	44.64	44.64
TraesCS1B01G380000.1	Wheat	nucleus	43.89	44.22
TraesCS1A01G362800.1	Wheat	nucleus	43.39	44.05
HORVU1Hr1G079450.1	Barley	nucleus	43.39	43.5
Os05t0541400-00	Rice	nucleus	44.64	43.03
KXG33221	Sorghum	nucleus	44.64	42.82
GSMUA_AchrUn_...	Banana	nucleus	26.93	39.56
Solyc03g121240.1.1	Tomato	nucleus	30.17	31.84
Bra001826.1-P	Field mustard	nucleus	25.69	31.79
CDY62045	Canola	nucleus	26.43	31.64
PGSC0003DMT400006453	Potato	nucleus	30.17	31.35
Bra031275.1-P	Field mustard	nucleus	25.94	31.33
CDY51449	Canola	nucleus	25.94	31.33
CDY32423	Canola	nucleus	25.44	30.91
CDY48884	Canola	nucleus	24.94	29.85
EES15124	Sorghum	nucleus	18.95	28.25
AT3G21330.1	Thale cress	nucleus	25.94	27.88
EER96848	Sorghum	nucleus	17.71	27.2
KRH47179	Soybean	nucleus	28.18	26.22
KRH44227	Soybean	nucleus	28.93	26.19
KRH23349	Soybean	nucleus	28.43	25.33
KRH09982	Soybean	nucleus	27.93	25.17
OQU87026	Sorghum	nucleus	27.68	24.08
VIT_09s0002g02700.t01	Wine grape	nucleus	27.68	23.57
EES14382	Sorghum	nucleus	18.7	21.55
EER99632	Sorghum	nucleus	12.97	18.44
OQU83893	Sorghum	nucleus	10.72	17.77
EER93400	Sorghum	nucleus	12.72	17.47
EES17296	Sorghum	nucleus	13.72	17.41
EER91225	Sorghum	nucleus	12.47	16.67
KXG39918	Sorghum	nucleus	12.72	15.84
EES00435	Sorghum	nucleus	10.97	15.17
EES07381	Sorghum	nucleus	11.47	15.03
OQU87789	Sorghum	cytosol	4.24	11.89

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:8061079	UniProt:C5YUV2	ncoils:Coil	EnsemblPlants:EES18589
ProteinID:EES18589	ProteinID:EES18589.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009791
GO:GO:0009987	GO:GO:0046983	GO:GO:0048586	GO:GO:0048587	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	ProteinID:OQU78368.1	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF309	SMART:SM00353
EnsemblPlantsGene:SORBI_3009G214700	SUPFAM:SSF47459	UniParc:UPI0001A88CD8	RefSeq:XP_002440159.1	InterPro:bHLH_dom	SEG:seg

Description

hypothetical protein

Coordinates

chr9:+:55968897..55970601

Molecular Weight (calculated)

40980.2 Da

IEP (calculated)

6.177

GRAVY (calculated)

-0.381

Length

401 amino acids

Sequence
(BLAST)

001: MEDFGGWSMQ YAADPCLPSR PSDDDGLLGA FLGGGFDLRS DHGGLSDLPS SHQVQNLMPC HGGASLSVSD GFMGLDTADM LASVTGALDD GLLDTFAYGS
101: DVVAAAAEEP AQPTASSNAF SSGYSSTTGG NYGNISSGES NTCSGGGGGH DTEVASPCAL SRSSALPQAT AALASKRKLG GKYPAVAATT STEAQVAAPW
201: RGAKRDSATS SSSTSITFAA GHGDHHAAGG SSSSAGGGYE YEPDSEALAQ VKEMIYRAAA MRPVHQLVCG AGTEPAPSSQ SKPRRKNVRI SSDPQTVAAR
301: LRRERVSERL RVLQRLVPGG SRMDTASMLD EAASYLKFLK TQVKALERAN PSNGGYHNSS LLPQSYTGTG SLGVGGGGTG VANGRDGAID GYVNSNRNMH
401: L

Best Arabidopsis Sequence Match ( AT3G21330.1 )
(BLAST)

001: MEGLESVYAQ AMYGMTRESK IMEHQGSDLI WGGNELMARE LCSSSSYHHQ LINPNLSSCF MSDLGVLGEI QQQQHVGNRA SSIDPSSLDC LLSATSNSNN
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC

Arabidopsis Description

BHLH87Transcription factor bHLH87 [Source:UniProtKB/Swiss-Prot;Acc:Q8S3D2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.