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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d006733_P001 Maize nucleus 86.88 85.66
Zm00001d021988_P001 Maize nucleus 84.04 80.34
Os07t0588400-00 Rice nucleus 74.11 70.85
PGSC0003DMT400008370 Potato nucleus 32.27 45.96
PGSC0003DMT400089728 Potato nucleus 39.36 36.39
Solyc10g049720.1.1 Tomato nucleus 38.3 36.24
Solyc10g049780.1.1 Tomato nucleus 34.4 35.66
OQU83893 Sorghum nucleus 29.08 33.88
Solyc01g107140.1.1 Tomato nucleus 39.36 33.64
GSMUA_Achr2P17130_001 Banana nucleus 37.59 33.54
PGSC0003DMT400087143 Potato nucleus 39.01 33.03
VIT_03s0091g00730.t01 Wine grape nucleus 39.72 32.0
Bra034587.1-P Field mustard nucleus 39.01 31.79
KRG91108 Soybean nucleus 39.72 31.73
KXG39918 Sorghum nucleus 36.17 31.68
KRH15444 Soybean nucleus 39.01 31.43
EER91225 Sorghum nucleus 32.98 31.0
KRH35668 Soybean nucleus 38.65 30.97
Bra036969.1-P Field mustard nucleus 38.3 30.86
Bra011476.1-P Field mustard nucleus 37.94 30.84
EES17296 Sorghum nucleus 34.4 30.7
KRH05600 Soybean nucleus 38.3 30.59
AT4G33880.1 Thale cress nucleus 37.94 30.4
KRH35669 Soybean nucleus 37.94 29.89
AT2G14760.3 Thale cress nucleus 35.46 29.33
KRG91107 Soybean nucleus 36.52 28.77
EER93400 Sorghum nucleus 29.43 28.42
Bra039819.1-P Field mustard nucleus 34.75 28.32
CDY48431 Canola nucleus 27.66 24.3
EES00435 Sorghum nucleus 21.63 21.03
EES07381 Sorghum nucleus 21.99 20.26
EES15124 Sorghum nucleus 15.6 16.36
EER96848 Sorghum nucleus 14.18 15.33
EES18589 Sorghum nucleus 18.44 12.97
EES14382 Sorghum nucleus 14.89 12.07
KXG33221 Sorghum nucleus 16.67 11.24
OQU87789 Sorghum cytosol 5.32 10.49
OQU87026 Sorghum nucleus 13.48 8.24
Protein Annotations
MapMan:15.5.32Gene3D:4.10.280.10EntrezGene:8078980UniProt:C5XD43EnsemblPlants:EER99632ProteinID:EER99632
ProteinID:EER99632.1GO:GO:0001046GO:GO:0001228GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0003700GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0006139GO:GO:0006366GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0045944GO:GO:0046983InterPro:HLH_DNA-bd_sfInterPro:IPR011598InterPro:IPR036638
PFAM:PF00010PFscan:PS50888PANTHER:PTHR16223PANTHER:PTHR16223:SF99SMART:SM00353EnsemblPlantsGene:SORBI_3002G359200
SUPFAM:SSF47459UniParc:UPI0001A83C35RefSeq:XP_002463111.1InterPro:bHLH_domSEG:seg:
Description
hypothetical protein
Coordinates
chr2:-:72142948..72144625
Molecular Weight (calculated)
31342.3 Da
IEP (calculated)
4.626
GRAVY (calculated)
-0.602
Length
282 amino acids
Sequence
(BLAST)
001: MEIDMMAQFL GTDDHCFTYE YEHVDESMEA IAALFLPNLD TDSNSSSCLN FDVPPQCWPQ PDHSSSVTSL LDPTENFESF EFPVIDPFPA SGFDSHCETP
101: YLTEYPISLH GKHSSVIEEE AANVTPAAKK RKASATTKGS KKSRKVSKKD YIGDDDGGDA YVDTQSSSSC TSEDGNFEGN TNSSTKKAYT RASRGAATDP
201: QSLYARKRRE RINERLRILQ KLVPNGTKVD ISTMLEEAAQ YVKFLQLQIK LLSSDDTWMY APIAYNGINI SNVDLNIPSL QK
Best Arabidopsis Sequence Match ( AT2G14760.1 )
(BLAST)
001: MEAMGEWSTG LGGIYTEEAD FMNQLLASYE QPCGGSSSET TATLTAYHHQ GSQWNGGFCF SQESSSYSGY CAAMPRQEED NNGMEDATIN TNLYLVGEET
101: SECDATEYSG KSLLPLETVA ENHDHSMLQP ENSLTTTTDE KMFNQCESSK KRTRATTTDK NKRANKARRS QKCVEMSGEN ENSGEEEYTE KAAGKRKTKP
201: LKPQKTCCSD DESNGGDTFL SKEDGEDSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQHLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS
301: SDDLWMYAPI AYNGMDIGLD LKLNALTR
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IGG9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.