Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G14760.3 | Thale cress | nucleus | 63.35 | 65.4 |
| PGSC0003DMT400008370 | Potato | nucleus | 28.69 | 51.01 |
| Solyc10g049780.1.1 | Tomato | nucleus | 34.09 | 44.12 |
| Solyc10g049720.1.1 | Tomato | nucleus | 35.8 | 42.28 |
| PGSC0003DMT400089728 | Potato | nucleus | 36.36 | 41.97 |
| VIT_03s0091g00730.t01 | Wine grape | nucleus | 41.19 | 41.43 |
| AT1G27740.1 | Thale cress | nucleus | 29.55 | 40.31 |
| PGSC0003DMT400087143 | Potato | nucleus | 37.5 | 39.64 |
| AT5G43175.1 | Thale cress | nucleus | 25.0 | 39.46 |
| Solyc01g107140.1.1 | Tomato | nucleus | 36.93 | 39.39 |
| KRG91108 | Soybean | nucleus | 38.92 | 38.81 |
| KRH35668 | Soybean | nucleus | 38.07 | 38.07 |
| EER99632 | Sorghum | nucleus | 30.4 | 37.94 |
| GSMUA_Achr2P17130_001 | Banana | nucleus | 33.24 | 37.03 |
| Zm00001d021988_P001 | Maize | nucleus | 30.97 | 36.95 |
| Zm00001d006733_P001 | Maize | nucleus | 29.83 | 36.71 |
| Os07t0588400-00 | Rice | nucleus | 30.68 | 36.61 |
| KRH35669 | Soybean | nucleus | 36.08 | 35.47 |
| KRH15444 | Soybean | nucleus | 34.94 | 35.14 |
| KRH05600 | Soybean | nucleus | 34.94 | 34.84 |
| KRG91107 | Soybean | nucleus | 35.23 | 34.64 |
| AT5G01305.1 | Thale cress | nucleus, plastid | 10.8 | 22.22 |
| AT4G00120.1 | Thale cress | nucleus | 11.93 | 21.21 |
| AT1G66470.1 | Thale cress | nucleus | 17.33 | 20.47 |
| AT5G09750.1 | Thale cress | nucleus | 12.78 | 20.09 |
| AT3G50330.1 | Thale cress | nucleus | 13.07 | 19.91 |
| AT5G37800.1 | Thale cress | nucleus | 17.05 | 19.54 |
| AT5G67060.1 | Thale cress | nucleus | 13.07 | 19.09 |
| AT3G21330.1 | Thale cress | nucleus | 15.06 | 14.21 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:829531 | ProteinID:AEE86287.1 | EMBL:AF488616 | EMBL:AK228110 |
| ArrayExpress:AT4G33880 | EnsemblPlantsGene:AT4G33880 | RefSeq:AT4G33880 | TAIR:AT4G33880 | RefSeq:AT4G33880-TAIR-G | EnsemblPlants:AT4G33880.1 |
| TAIR:AT4G33880.1 | Unigene:At.31542 | EMBL:BT003137 | ProteinID:CAA19870.1 | ProteinID:CAB80105.1 | ncoils:Coil |
| GO:GO:0001046 | GO:GO:0001228 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006366 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016049 | GO:GO:0030154 | GO:GO:0040007 | GO:GO:0045944 | GO:GO:0046983 |
| GO:GO:0048766 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | RefSeq:NP_195114.2 | PFAM:PF00010 |
| PFscan:PS50888 | PANTHER:PTHR16223 | PANTHER:PTHR16223:SF105 | UniProt:Q84WK0 | Symbol:RSL2 | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000000BF07 | InterPro:bHLH_dom | SEG:seg | : | : |
Description
BHLH85Transcription factor bHLH85 [Source:UniProtKB/Swiss-Prot;Acc:Q84WK0]
Coordinates
chr4:-:16239363..16241169
Molecular Weight (calculated)
38772.5 Da
IEP (calculated)
4.588
GRAVY (calculated)
-0.825
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAMGEWSNN LGGMYTYATE EADFMNQLLA SYDHPGTGSS SGAAASGDHQ GLYWNLGSHH NHLSLVSEAG SFCFSQESSS YSAGNSGYYT VVPPTVEENQ
101: NETMDFGMED VTINTNSYLV GEETSECDVE KYSSGKTLMP LETVVENHDD EESLLQSEIS VTTTKSLTGS KKRSRATSTD KNKRARVNKR AQKNVEMSGD
201: NNEGEEEEGE TKLKKRKNGA MMSRQNSSTT FCTEEESNCA DQDGGGEDSS SKEDDPSKAL NLNGKTRASR GAATDPQSLY ARKRRERINE RLRILQNLVP
301: NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DDLWMYAPIA FNGMDIGLSS PR
101: NETMDFGMED VTINTNSYLV GEETSECDVE KYSSGKTLMP LETVVENHDD EESLLQSEIS VTTTKSLTGS KKRSRATSTD KNKRARVNKR AQKNVEMSGD
201: NNEGEEEEGE TKLKKRKNGA MMSRQNSSTT FCTEEESNCA DQDGGGEDSS SKEDDPSKAL NLNGKTRASR GAATDPQSLY ARKRRERINE RLRILQNLVP
301: NGTKVDISTM LEEAVHYVKF LQLQIKLLSS DDLWMYAPIA FNGMDIGLSS PR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.