Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 3
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66929 | Canola | nucleus, plastid | 69.59 | 67.23 |
| Bra028895.1-P | Field mustard | nucleus, plastid | 69.59 | 67.23 |
| CDY55900 | Canola | nucleus, plastid | 69.59 | 67.23 |
| VIT_08s0058g00110.t01 | Wine grape | plastid | 45.03 | 47.83 |
| Solyc09g005070.1.1 | Tomato | nucleus | 36.26 | 41.89 |
| KRH65648 | Soybean | nucleus, plastid | 40.94 | 38.46 |
| KRH75991 | Soybean | nucleus, plastid | 39.77 | 38.2 |
| KRH00301 | Soybean | nucleus, plastid | 38.6 | 37.5 |
| KRH49427 | Soybean | nucleus, plastid | 38.01 | 36.93 |
| GSMUA_Achr4P18820_001 | Banana | nucleus | 38.01 | 31.71 |
| HORVU3Hr1G087710.1 | Barley | nucleus | 32.75 | 26.67 |
| Zm00001d042989_P001 | Maize | nucleus, plastid | 32.75 | 26.54 |
| Zm00001d042988_P001 | Maize | nucleus, plastid | 32.75 | 26.54 |
| Os01t0831000-01 | Rice | nucleus | 33.33 | 26.51 |
| TraesCS3B01G383000.1 | Wheat | nucleus | 32.75 | 26.42 |
| TraesCS3D01G344600.1 | Wheat | nucleus | 32.75 | 26.29 |
| TraesCS3A01G350600.1 | Wheat | nucleus | 32.16 | 25.94 |
| AT5G09750.1 | Thale cress | nucleus | 30.41 | 23.21 |
| AT4G00120.1 | Thale cress | nucleus | 25.15 | 21.72 |
| AT3G50330.1 | Thale cress | nucleus | 28.07 | 20.78 |
| AT5G67060.1 | Thale cress | nucleus | 27.49 | 19.5 |
| OQU87789 | Sorghum | cytosol | 15.79 | 18.88 |
| AT5G43175.1 | Thale cress | nucleus | 20.47 | 15.7 |
| AT1G27740.1 | Thale cress | nucleus | 21.64 | 14.34 |
| AT1G66470.1 | Thale cress | nucleus | 23.39 | 13.42 |
| AT5G37800.1 | Thale cress | nucleus | 22.22 | 12.38 |
| AT3G21330.1 | Thale cress | nucleus | 25.73 | 11.8 |
| AT2G14760.3 | Thale cress | nucleus | 21.64 | 10.85 |
| AT4G33880.1 | Thale cress | nucleus | 22.22 | 10.8 |
Protein Annotations
| MapMan:15.5.32 | EntrezGene:28720373 | Gene3D:4.10.280.10 | UniProt:A0A178UDM7 | UniProt:A0A1P8BD33 | ProteinID:ANM69513.1 |
| ArrayExpress:AT5G01305 | EnsemblPlantsGene:AT5G01305 | EnsemblPlants:AT5G01305.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006260 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006790 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009150 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0046872 | GO:GO:0046983 | GO:GO:0047627 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | RefSeq:NP_001331183.1 | ProteinID:OAO90801.1 | PFAM:PF00010 |
| PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF167 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000152B4E8 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
Transcription factor bHLH140-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BD33]
Coordinates
chr5:+:125304..125819
Molecular Weight (calculated)
19177.0 Da
IEP (calculated)
5.590
GRAVY (calculated)
-0.777
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDFNLRSEN PNSSSTTSSS SSSFHRHKSE TGNTKRSRST STLSTDPQSV AARDRRHRIS DRFKILQSMV PGGAKMDTVS MLDEAISYVK FLKAQIWYHQ
101: NMLLFINDHE TTSSCTYSPG AGEFGPKLFG YDDDYAPIMD TYSQGVPLTV ADSKYTPWFG SVDDEQERDS S
101: NMLLFINDHE TTSSCTYSPG AGEFGPKLFG YDDDYAPIMD TYSQGVPLTV ADSKYTPWFG SVDDEQERDS S
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.