Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0058g00110.t01 | Wine grape | plastid | 37.56 | 47.83 |
| Solyc09g005070.1.1 | Tomato | nucleus | 32.2 | 44.59 |
| KRH75991 | Soybean | nucleus, plastid | 37.07 | 42.7 |
| KRH00301 | Soybean | nucleus, plastid | 36.59 | 42.61 |
| KRH65648 | Soybean | nucleus, plastid | 36.1 | 40.66 |
| KRH49427 | Soybean | nucleus, plastid | 34.15 | 39.77 |
| AT5G01305.1 | Thale cress | nucleus, plastid | 31.71 | 38.01 |
| GSMUA_Achr6P18580_001 | Banana | cytosol | 21.95 | 36.89 |
| Bra028895.1-P | Field mustard | nucleus, plastid | 31.22 | 36.16 |
| CDY55900 | Canola | nucleus, plastid | 31.22 | 36.16 |
| CDY66929 | Canola | nucleus, plastid | 31.22 | 36.16 |
| Zm00001d042989_P001 | Maize | nucleus, plastid | 35.12 | 34.12 |
| Zm00001d042988_P001 | Maize | nucleus, plastid | 35.12 | 34.12 |
| HORVU3Hr1G087710.1 | Barley | nucleus | 34.63 | 33.81 |
| TraesCS3D01G344600.1 | Wheat | nucleus | 35.12 | 33.8 |
| TraesCS3B01G383000.1 | Wheat | nucleus | 34.63 | 33.49 |
| TraesCS3A01G350600.1 | Wheat | nucleus | 34.63 | 33.49 |
| Os01t0831000-01 | Rice | nucleus | 35.12 | 33.49 |
| GSMUA_Achr3P01250_001 | Banana | cytosol, nucleus, plastid | 18.54 | 31.41 |
| GSMUA_Achr9P29130_001 | Banana | nucleus | 22.93 | 30.72 |
| GSMUA_Achr7P23410_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 24.39 | 29.76 |
| GSMUA_Achr8P23350_001 | Banana | nucleus | 20.98 | 27.74 |
| GSMUA_Achr1P14400_001 | Banana | nucleus | 21.95 | 26.95 |
| GSMUA_Achr6P16890_001 | Banana | nucleus | 17.56 | 26.47 |
| GSMUA_Achr11P... | Banana | nucleus | 23.9 | 25.65 |
| OQU87789 | Sorghum | cytosol | 17.07 | 24.48 |
| GSMUA_Achr4P23240_001 | Banana | nucleus | 17.07 | 23.97 |
| GSMUA_Achr5P01290_001 | Banana | nucleus | 22.93 | 23.74 |
| GSMUA_Achr10P... | Banana | nucleus | 26.83 | 22.73 |
| GSMUA_Achr9P15380_001 | Banana | nucleus | 23.9 | 20.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 22.44 | 16.85 |
| GSMUA_Achr6P07760_001 | Banana | nucleus | 20.49 | 14.63 |
| GSMUA_AchrUn_... | Banana | nucleus | 20.49 | 14.05 |
| GSMUA_Achr3P25950_001 | Banana | nucleus | 23.41 | 13.64 |
| GSMUA_Achr8P24970_001 | Banana | nucleus | 22.44 | 13.22 |
| GSMUA_Achr10P... | Banana | nucleus | 18.54 | 12.75 |
| GSMUA_Achr2P22860_001 | Banana | nucleus | 20.0 | 12.73 |
| GSMUA_Achr9P09600_001 | Banana | nucleus | 17.07 | 12.68 |
| GSMUA_Achr6P09370_001 | Banana | nucleus | 20.0 | 12.09 |
| GSMUA_Achr2P17130_001 | Banana | nucleus | 18.54 | 12.03 |
| GSMUA_Achr3P18870_001 | Banana | nucleus | 19.02 | 11.27 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009987 |
| GO:GO:0045893 | GO:GO:0046983 | GO:GO:2000032 | EnsemblPlantsGene:GSMUA_Achr4G18820_001 | EnsemblPlants:GSMUA_Achr4P18820_001 | EnsemblPlants:GSMUA_Achr4T18820_001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M0SQ45 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF167 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000296691F | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G18820_001]
Coordinates
chr4:+:19843790..19844407
Molecular Weight (calculated)
22468.5 Da
IEP (calculated)
6.502
GRAVY (calculated)
-0.322
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPFADSHFQ LMESYHYQPS DSCPPLATSH WVAEGEPTSS LGFITKERRR GGKRGGGVKL STDPQSVAAR ERRHRISDRF KILKSLVPGG SKMDTVSMLE
101: EAINYVKFLK SQIWLHQAAL MLHPDDCSSL LSLSSPALSA NANAIGTATI NAGVDASCST PCLMLPNDQM SSFSTAPPQQ SFSAFPYCSF QEGEDEMFHH
201: GSFIY
101: EAINYVKFLK SQIWLHQAAL MLHPDDCSSL LSLSSPALSA NANAIGTATI NAGVDASCST PCLMLPNDQM SSFSTAPPQQ SFSAFPYCSF QEGEDEMFHH
201: GSFIY
001: MDDFNLRSEN PNSSSTTSSS SSSFHRHKSE TGNTKRSRST STLSTDPQSV AARDRRHRIS DRFKILQSMV PGGAKMDTVS MLDEAISYVK FLKAQIWYHQ
101: NMLLFINDHE TTSSCTYSPG AGEFGPKLFG YDDDYAPIMD TYSQGVPLTV ADSKYTPWFG SVDDEQERDS S
101: NMLLFINDHE TTSSCTYSPG AGEFGPKLFG YDDDYAPIMD TYSQGVPLTV ADSKYTPWFG SVDDEQERDS S
Arabidopsis Description
Transcription factor bHLH140-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8BD33]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.