Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P26350_001 | |
| GSMUA_Achr4P30070_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G66470.1 | GSMUA_Achr4P26350_001 | AT5G47100.1 | 21798944 |
| AT1G66470.1 | GSMUA_Achr4P30070_001 | AT5G47100.1 | 21798944 |
| AT1G66470.1 | GSMUA_AchrUn_... | AT5G47100.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 80.17 | 32.55 |
| GSMUA_Achr6P16890_001 | Banana | nucleus | 36.36 | 32.35 |
| GSMUA_Achr4P23240_001 | Banana | nucleus | 38.84 | 32.19 |
| GSMUA_Achr6P18580_001 | Banana | cytosol | 31.41 | 31.15 |
| GSMUA_Achr2P22860_001 | Banana | nucleus | 80.99 | 30.43 |
| CDX68049 | Canola | nucleus | 69.42 | 28.97 |
| CDX96145 | Canola | nucleus | 69.42 | 28.97 |
| CDY11694 | Canola | nucleus | 69.42 | 28.97 |
| CDY55674 | Canola | nucleus | 69.42 | 28.97 |
| GSMUA_Achr6P09370_001 | Banana | nucleus | 80.99 | 28.91 |
| AT1G66470.1 | Thale cress | nucleus | 70.25 | 28.52 |
| TraesCS3B01G007700.1 | Wheat | nucleus | 64.46 | 28.47 |
| TraesCS3B01G010400.1 | Wheat | nucleus | 64.46 | 28.47 |
| TraesCS3A01G006300.1 | Wheat | cytosol, nucleus, plastid | 64.46 | 28.47 |
| TraesCS3D01G004300.1 | Wheat | cytosol, nucleus, plastid | 64.46 | 28.36 |
| KRH15121 | Soybean | nucleus | 66.12 | 27.3 |
| CDY61813 | Canola | nucleus | 67.77 | 26.89 |
| PGSC0003DMT400078776 | Potato | nucleus | 70.25 | 26.81 |
| Os01t0111500-01 | Rice | nucleus | 65.29 | 26.78 |
| Zm00001d017804_P001 | Maize | nucleus | 65.29 | 26.78 |
| TraesCS6B01G303600.1 | Wheat | cytosol, nucleus, plastid | 62.81 | 26.76 |
| AT5G37800.1 | Thale cress | nucleus | 67.77 | 26.71 |
| CDY58387 | Canola | nucleus | 67.77 | 26.71 |
| Bra019708.1-P | Field mustard | nucleus | 67.77 | 26.71 |
| Os02t0710300-01 | Rice | nucleus | 66.12 | 26.67 |
| Solyc02g091440.1.1 | Tomato | nucleus | 69.42 | 26.5 |
| KRH73015 | Soybean | nucleus | 64.46 | 26.44 |
| TraesCS6D01G256600.1 | Wheat | nucleus | 62.81 | 26.3 |
| EES00435 | Sorghum | nucleus | 61.98 | 25.86 |
| EES07381 | Sorghum | nucleus | 65.29 | 25.82 |
| TraesCS6D01G256500.1 | Wheat | cytosol | 60.33 | 25.8 |
| TraesCS6A01G276100.1 | Wheat | nucleus | 61.98 | 25.77 |
| TraesCS6A01G276200.1 | Wheat | cytosol, nucleus, plastid | 61.16 | 25.61 |
| TraesCS6B01G303500.1 | Wheat | nucleus | 60.33 | 25.52 |
| VIT_14s0006g01470.t01 | Wine grape | nucleus | 72.73 | 25.36 |
| TraesCS6D01G256300.1 | Wheat | nucleus | 60.33 | 24.83 |
| KRH30960 | Soybean | nucleus | 69.42 | 24.78 |
| KRG97923 | Soybean | nucleus | 68.59 | 24.48 |
| TraesCS7A01G229900.1 | Wheat | nucleus | 57.02 | 24.21 |
| TraesCS7D01G230600.1 | Wheat | nucleus | 57.02 | 24.13 |
| TraesCS6D01G256400.1 | Wheat | nucleus | 54.55 | 24.0 |
| TraesCS7B01G195800.1 | Wheat | nucleus | 57.85 | 23.97 |
| GSMUA_Achr8P23350_001 | Banana | nucleus | 30.58 | 23.87 |
| Zm00001d008444_P001 | Maize | nucleus | 62.81 | 23.38 |
| GSMUA_Achr1P14400_001 | Banana | nucleus | 32.23 | 23.35 |
| GSMUA_Achr7P23410_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 32.23 | 23.21 |
| Bra004169.1-P | Field mustard | nucleus | 51.24 | 23.13 |
| GSMUA_Achr9P29130_001 | Banana | nucleus | 28.93 | 22.88 |
| HORVU7Hr1G046580.1 | Barley | plasma membrane, vacuole | 58.68 | 21.45 |
| GSMUA_Achr11P... | Banana | nucleus | 33.06 | 20.94 |
| Os06t0496400-01 | Rice | nucleus | 47.93 | 19.73 |
| GSMUA_Achr5P01290_001 | Banana | nucleus | 32.23 | 19.7 |
| GSMUA_Achr4P18820_001 | Banana | nucleus | 31.41 | 18.54 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.32 | 16.72 |
| GSMUA_Achr6P07760_001 | Banana | nucleus | 38.84 | 16.38 |
| GSMUA_Achr9P09600_001 | Banana | nucleus | 37.19 | 16.3 |
| GSMUA_Achr9P15380_001 | Banana | nucleus | 32.23 | 15.92 |
| GSMUA_Achr10P... | Banana | nucleus | 31.41 | 15.7 |
| GSMUA_Achr2P17130_001 | Banana | nucleus | 40.5 | 15.51 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.23 | 14.29 |
| GSMUA_Achr3P18870_001 | Banana | nucleus | 39.67 | 13.87 |
| GSMUA_Achr3P25950_001 | Banana | nucleus | 31.41 | 10.8 |
| GSMUA_Achr8P24970_001 | Banana | nucleus | 30.58 | 10.63 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P01250_001 | EnsemblPlants:GSMUA_Achr3T01250_001 | EnsemblPlantsGene:GSMUA_Achr3G01250_001 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR16223 | PANTHER:PTHR16223:SF19 | PFAM:PF00010 | PFscan:PS50888 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI000296B630 | UniProt:M0SAU3 | MapMan:15.5.32 | : | : | : |
Description
Transcription factor bHLH83 [Source:GMGC_GENE;Acc:GSMUA_Achr3G01250_001]
Coordinates
chr3:-:917163..917859
Molecular Weight (calculated)
13471.2 Da
IEP (calculated)
10.322
GRAVY (calculated)
-0.764
Length
121 amino acids
Sequence
(BLAST)
(BLAST)
001: MQYACDMQSP KKQCGNARKT KDKSSPSEDP QSIAAKNRRE RISERLKVLQ GLVPDGTKVD LVTMLEKAIS YVKFLQLQVK VLATDEFWPA QGGKAPDVGK
101: AKEAIDAILS THGDRNRRSK Q
101: AKEAIDAILS THGDRNRRSK Q
001: MALVNDHPNE TNYLSKQNSS SSEDLSSPGL DQPDAAYAGG GGGGGSASSS STMNSDHQQH QGFVFYPSGE DHHNSLMDFN GSSFLNFDHH ESFPPPAISC
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN
Arabidopsis Description
BHLH83RHD6 [Source:UniProtKB/TrEMBL;Acc:A0A178W430]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.