Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019708.1-P | Field mustard | nucleus | 99.02 | 99.02 |
| CDY61813 | Canola | nucleus | 97.39 | 98.03 |
| CDY11694 | Canola | nucleus | 81.43 | 86.21 |
| CDX68049 | Canola | nucleus | 81.43 | 86.21 |
| CDY55674 | Canola | nucleus | 81.43 | 86.21 |
| CDX96145 | Canola | nucleus | 81.43 | 86.21 |
| AT1G66470.1 | Thale cress | nucleus | 82.74 | 85.23 |
| GSMUA_Achr3P01250_001 | Banana | cytosol, nucleus, plastid | 26.71 | 67.77 |
| AT5G37800.1 | Thale cress | nucleus | 66.12 | 66.12 |
| KRH73015 | Soybean | nucleus | 39.74 | 41.36 |
| KRH15121 | Soybean | nucleus | 39.41 | 41.3 |
| Solyc02g091440.1.1 | Tomato | nucleus | 40.39 | 39.12 |
| PGSC0003DMT400078776 | Potato | nucleus | 39.41 | 38.17 |
| Os02t0710300-01 | Rice | nucleus | 37.13 | 38.0 |
| TraesCS3B01G007700.1 | Wheat | nucleus | 32.25 | 36.13 |
| TraesCS3B01G010400.1 | Wheat | nucleus | 32.25 | 36.13 |
| KRG97923 | Soybean | nucleus | 39.74 | 35.99 |
| TraesCS3A01G006300.1 | Wheat | cytosol, nucleus, plastid | 31.92 | 35.77 |
| TraesCS3D01G004300.1 | Wheat | cytosol, nucleus, plastid | 31.92 | 35.64 |
| Zm00001d017804_P001 | Maize | nucleus | 34.2 | 35.59 |
| VIT_14s0006g01470.t01 | Wine grape | nucleus | 40.07 | 35.45 |
| KRH30960 | Soybean | nucleus | 39.09 | 35.4 |
| GSMUA_Achr10P... | Banana | nucleus | 34.2 | 35.23 |
| EES07381 | Sorghum | nucleus | 34.85 | 34.97 |
| TraesCS6B01G303600.1 | Wheat | cytosol, nucleus, plastid | 32.25 | 34.86 |
| TraesCS6D01G256500.1 | Wheat | cytosol | 31.92 | 34.63 |
| TraesCS6D01G256600.1 | Wheat | nucleus | 32.25 | 34.26 |
| TraesCS6A01G276100.1 | Wheat | nucleus | 32.25 | 34.02 |
| TraesCS6B01G303500.1 | Wheat | nucleus | 31.6 | 33.92 |
| TraesCS6A01G276200.1 | Wheat | cytosol, nucleus, plastid | 31.92 | 33.91 |
| TraesCS7B01G195800.1 | Wheat | nucleus | 31.92 | 33.56 |
| TraesCS6D01G256300.1 | Wheat | nucleus | 31.92 | 33.33 |
| TraesCS7A01G229900.1 | Wheat | nucleus | 30.94 | 33.33 |
| GSMUA_Achr2P22860_001 | Banana | nucleus | 34.85 | 33.23 |
| TraesCS7D01G230600.1 | Wheat | nucleus | 30.94 | 33.22 |
| EES00435 | Sorghum | nucleus | 30.94 | 32.76 |
| TraesCS6D01G256400.1 | Wheat | nucleus | 28.66 | 32.0 |
| GSMUA_Achr6P09370_001 | Banana | nucleus | 34.85 | 31.56 |
| Os01t0111500-01 | Rice | nucleus | 29.64 | 30.85 |
| Zm00001d008444_P001 | Maize | nucleus | 31.92 | 30.15 |
| HORVU7Hr1G046580.1 | Barley | plasma membrane, vacuole | 30.94 | 28.7 |
| CDY03948 | Canola | cytosol | 12.7 | 26.9 |
| Os06t0496400-01 | Rice | nucleus | 25.73 | 26.87 |
| CDY15706 | Canola | nucleus | 17.92 | 25.94 |
| CDX90106 | Canola | nucleus | 17.59 | 25.35 |
| CDY55900 | Canola | nucleus, plastid | 13.36 | 23.16 |
| CDY66929 | Canola | nucleus, plastid | 13.36 | 23.16 |
| CDY27630 | Canola | nucleus | 18.24 | 23.14 |
| CDX84906 | Canola | nucleus | 18.24 | 22.95 |
| CDY11768 | Canola | nucleus | 18.57 | 22.27 |
| CDY18636 | Canola | nucleus | 14.66 | 21.95 |
| CDY11802 | Canola | nucleus | 15.96 | 21.3 |
| CDX81342 | Canola | cytoskeleton, cytosol, nucleus | 14.01 | 20.77 |
| CDY30593 | Canola | nucleus | 14.01 | 20.19 |
| CDY12799 | Canola | nucleus | 14.33 | 20.18 |
| CDY01443 | Canola | nucleus | 14.01 | 19.63 |
| CDX85799 | Canola | nucleus | 13.68 | 19.63 |
| CDY64847 | Canola | nucleus | 13.68 | 19.53 |
| CDX83121 | Canola | nucleus | 14.33 | 19.13 |
| CDY43559 | Canola | nucleus | 14.33 | 19.05 |
| CDY63952 | Canola | nucleus | 14.33 | 19.05 |
| CDY17765 | Canola | nucleus | 14.01 | 19.03 |
| CDX68583 | Canola | nucleus | 14.01 | 18.94 |
| CDX91916 | Canola | cytosol | 10.75 | 18.54 |
| CDY21597 | Canola | nucleus | 13.03 | 17.94 |
| CDX72435 | Canola | nucleus | 19.87 | 17.43 |
| CDX81461 | Canola | nucleus | 19.54 | 17.34 |
| CDY37221 | Canola | nucleus | 19.54 | 17.34 |
| CDX75386 | Canola | nucleus | 19.54 | 17.29 |
| CDY28328 | Canola | nucleus | 19.87 | 17.13 |
| CDX74329 | Canola | cytosol | 10.1 | 17.03 |
| CDX69011 | Canola | nucleus | 19.22 | 17.0 |
| CDY49379 | Canola | nucleus | 19.22 | 16.86 |
| CDY62045 | Canola | nucleus | 15.31 | 14.03 |
| CDY51449 | Canola | nucleus | 14.98 | 13.86 |
| CDY32423 | Canola | nucleus | 14.66 | 13.64 |
| CDY48884 | Canola | nucleus | 14.33 | 13.13 |
| CDY48431 | Canola | nucleus | 13.68 | 13.08 |
| CDY03946 | Canola | nucleus | 6.51 | 7.27 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078J041 | UniProt:A0A078J041 | EnsemblPlants:CDY58387 | ProteinID:CDY58387 |
| ProteinID:CDY58387.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00023515001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR16223 |
| PANTHER:PTHR16223:SF19 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EDD4E6 | InterPro:bHLH_dom | SEG:seg |
Description
BnaA02g35540DBnaA02g35540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J041]
Coordinates
chrLK033664:+:32269..33643
Molecular Weight (calculated)
33440.5 Da
IEP (calculated)
7.910
GRAVY (calculated)
-0.834
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MALVNNHPNE AKYVSKQNSS SQDLSSPENY GLDQPDAAYA GGGGHSASSS STMNSDHQQN HQGIVFYPSG ESVEDHNSLL DFNGSSFLNF DHNDDRHERF
101: PPPTVSCGGV SGGFSFLEGN NMSYSFTNWN QHHMDIIGPR HIETPGTNQV HKDWLYSDST VVTTGSRHKS VSPKSTGNKR SYTGESSQPP SKKPTSGAKG
201: KAKPKPTTSP KDPQSLAAKN RRERISERLK ILQELVPNGT KVDLVTMLEK AISYVKFLQV QVKVLAADEF WPAQGGKAPD ISQVKDAIDA ILSSSQRGRN
301: SDPVTNQ
101: PPPTVSCGGV SGGFSFLEGN NMSYSFTNWN QHHMDIIGPR HIETPGTNQV HKDWLYSDST VVTTGSRHKS VSPKSTGNKR SYTGESSQPP SKKPTSGAKG
201: KAKPKPTTSP KDPQSLAAKN RRERISERLK ILQELVPNGT KVDLVTMLEK AISYVKFLQV QVKVLAADEF WPAQGGKAPD ISQVKDAIDA ILSSSQRGRN
301: SDPVTNQ
001: MALVNDHPNE TNYLSKQNSS SSEDLSSPGL DQPDAAYAGG GGGGGSASSS STMNSDHQQH QGFVFYPSGE DHHNSLMDFN GSSFLNFDHH ESFPPPAISC
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN
101: GGSSGGGGFS FLEGNNMSYG FTNWNHQHHM DIISPRSTET PQGQKDWLYS DSTVVTTGSR NESLSPKSAG NKRSHTGEST QPSKKLSSGV TGKTKPKPTT
201: SPKDPQSLAA KNRRERISER LKILQELVPN GTKVDLVTML EKAISYVKFL QVQVKVLATD EFWPAQGGKA PDISQVKDAI DAILSSSQRD RNSNLITN
Arabidopsis Description
BHLH83RHD6 [Source:UniProtKB/TrEMBL;Acc:A0A178W430]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.