Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G09750.1 | CDX69281 | AT4G36930.1 | 17855426 |
| AT5G09750.1 | CDX75629 | AT4G36930.1 | 17855426 |
| AT5G09750.1 | CDY22448 | AT4G36930.1 | 17855426 |
| AT5G09750.1 | CDY44048 | AT4G36930.1 | 17855426 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85799 | Canola | nucleus | 80.72 | 84.11 |
| CDY64847 | Canola | nucleus | 80.27 | 83.26 |
| AT5G09750.1 | Thale cress | nucleus | 78.92 | 78.57 |
| GSMUA_Achr6P18580_001 | Banana | cytosol | 40.81 | 74.59 |
| GSMUA_Achr7P23410_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 40.36 | 53.57 |
| GSMUA_Achr5P01290_001 | Banana | nucleus | 44.39 | 50.0 |
| GSMUA_Achr11P... | Banana | nucleus | 40.36 | 47.12 |
| CDX91916 | Canola | cytosol | 34.53 | 43.26 |
| CDX74329 | Canola | cytosol | 34.53 | 42.31 |
| KRH59559 | Soybean | nucleus | 49.33 | 41.35 |
| KRH43543 | Soybean | nucleus | 50.22 | 41.33 |
| Zm00001d049721_P001 | Maize | nucleus | 49.78 | 38.68 |
| Os08t0108500-01 | Rice | nucleus | 51.57 | 37.58 |
| CDY18636 | Canola | nucleus | 33.63 | 36.59 |
| CDX81342 | Canola | cytoskeleton, cytosol, nucleus | 33.63 | 36.23 |
| CDY12799 | Canola | nucleus | 34.08 | 34.86 |
| TraesCS7A01G323000.1 | Wheat | nucleus | 48.88 | 34.82 |
| Zm00001d035027_P001 | Maize | nucleus | 52.02 | 34.63 |
| TraesCS7D01G319600.1 | Wheat | nucleus | 48.88 | 34.38 |
| TraesCS7B01G223900.1 | Wheat | nucleus | 48.88 | 33.96 |
| CDY30593 | Canola | nucleus | 32.29 | 33.8 |
| CDY01443 | Canola | nucleus | 33.18 | 33.79 |
| EES14382 | Sorghum | nucleus | 52.02 | 33.33 |
| CDY43559 | Canola | nucleus | 33.63 | 32.47 |
| CDY63952 | Canola | nucleus | 33.63 | 32.47 |
| CDY17765 | Canola | nucleus | 32.74 | 32.3 |
| CDX68583 | Canola | nucleus | 32.74 | 32.16 |
| CDX83121 | Canola | nucleus | 32.74 | 31.74 |
| HORVU7Hr1G077270.3 | Barley | cytosol | 47.53 | 31.27 |
| CDY66929 | Canola | nucleus, plastid | 21.52 | 27.12 |
| CDY55900 | Canola | nucleus, plastid | 21.52 | 27.12 |
| CDY51449 | Canola | nucleus | 30.04 | 20.18 |
| CDY62045 | Canola | nucleus | 30.04 | 20.0 |
| CDY32423 | Canola | nucleus | 29.15 | 19.7 |
| CDY48884 | Canola | nucleus | 28.7 | 19.1 |
| CDY03948 | Canola | cytosol | 12.11 | 18.62 |
| CDY15706 | Canola | nucleus | 17.49 | 18.4 |
| CDX90106 | Canola | nucleus | 16.14 | 16.9 |
| CDX84906 | Canola | nucleus | 17.49 | 15.98 |
| CDY27630 | Canola | nucleus | 17.04 | 15.7 |
| CDY11802 | Canola | nucleus | 15.25 | 14.78 |
| CDY11768 | Canola | nucleus | 16.14 | 14.06 |
| CDY55674 | Canola | nucleus | 17.94 | 13.79 |
| CDY28328 | Canola | nucleus | 21.52 | 13.48 |
| CDY11694 | Canola | nucleus | 17.49 | 13.45 |
| CDX96145 | Canola | nucleus | 17.49 | 13.45 |
| CDX68049 | Canola | nucleus | 17.49 | 13.45 |
| CDX75386 | Canola | nucleus | 20.63 | 13.26 |
| CDX69011 | Canola | nucleus | 20.63 | 13.26 |
| CDY49379 | Canola | nucleus | 20.63 | 13.14 |
| CDY61813 | Canola | nucleus | 17.94 | 13.11 |
| CDY58387 | Canola | nucleus | 17.94 | 13.03 |
| CDX72435 | Canola | nucleus | 20.18 | 12.86 |
| CDY37221 | Canola | nucleus | 18.83 | 12.14 |
| CDX81461 | Canola | nucleus | 18.83 | 12.14 |
| CDY48431 | Canola | nucleus | 15.7 | 10.9 |
| CDY03946 | Canola | nucleus | 4.04 | 3.27 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078G9C4 | UniProt:A0A078G9C4 | EnsemblPlants:CDY21597 | ProteinID:CDY21597 |
| ProteinID:CDY21597.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00016066001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF125 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EF42E1 | InterPro:bHLH_dom | SEG:seg |
Description
BnaC09g46950DBnaC09g46950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G9C4]
Coordinates
chrLK032122:-:420271..422282
Molecular Weight (calculated)
25324.6 Da
IEP (calculated)
5.584
GRAVY (calculated)
-0.880
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNNNMNPSL DQNYTWNNII MNNKNDHHHN DPIDMAMNQH TQLHIFNPFT SSSSSFHFPP LSSSLTTTTF FSGDQEEEED EEEPVEELSA MKEMMYKIAA
101: MQPVDIDPAT VKKPKRRNVR ISDDPQSVAA RQRHERISER IRILQRLVPG GTKMDTASML DEAIRYVKFL KRQIRLLNNP PPPQDQASQV VTTSWVSQPP
201: PPDFGGGGGG DWYKSGENSI NSN
101: MQPVDIDPAT VKKPKRRNVR ISDDPQSVAA RQRHERISER IRILQRLVPG GTKMDTASML DEAIRYVKFL KRQIRLLNNP PPPQDQASQV VTTSWVSQPP
201: PPDFGGGGGG DWYKSGENSI NSN
001: MNNYNMNPSL FQNYTWNNII NSSNNNNKND DHHHQHNNDP IGMAMDQYTQ LHIFNPFSSS HFPPLSSSLT TTTLLSGDQE DDEDEEEPLE ELGAMKEMMY
101: KIAAMQSVDI DPATVKKPKR RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LNNNTGYTPP PPQDQASQAV
201: TTSWVSPPPP PSFGRGGRGV GELI
101: KIAAMQSVDI DPATVKKPKR RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LNNNTGYTPP PPQDQASQAV
201: TTSWVSPPPP PSFGRGGRGV GELI
Arabidopsis Description
HEC3Transcription factor HEC3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.