Factsheet for Zm00001d035027_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005094_P001
Zm00001d018416_P001
Zm00001d044606_P001
Zm00001d045212_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00120.1	Zm00001d005094_P001	AT2G38270.1	21798944
AT4G00120.1	Zm00001d044606_P001	AT2G38270.1	21798944
AT5G09750.1	Zm00001d018416_P001	AT4G36930.1	17855426
AT5G09750.1	Zm00001d045212_P001	AT4G36930.1	17855426

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14382	Sorghum	nucleus	93.73	90.23
Zm00001d049721_P001	Maize	nucleus	72.24	84.32
Os08t0108500-01	Rice	nucleus	71.34	78.1
GSMUA_Achr6P18580_001	Banana	cytosol	28.06	77.05
TraesCS7A01G323000.1	Wheat	nucleus	70.15	75.08
TraesCS7D01G319600.1	Wheat	nucleus	70.15	74.13
TraesCS7B01G223900.1	Wheat	nucleus	70.45	73.52
GSMUA_Achr5P01290_001	Banana	nucleus	38.51	65.15
GSMUA_Achr7P23410_001	Banana	endoplasmic reticulum, extracellular, vacuole	31.34	62.5
GSMUA_Achr11P...	Banana	nucleus	35.22	61.78
HORVU7Hr1G077270.3	Barley	cytosol	62.39	61.65
Bra028620.1-P	Field mustard	nucleus	35.52	55.61
CDX85799	Canola	nucleus	35.52	55.61
CDY64847	Canola	nucleus	35.52	55.35
VIT_04s0044g01040.t01	Wine grape	nucleus	36.42	54.71
AT5G09750.1	Thale cress	nucleus	35.52	53.12
CDY21597	Canola	nucleus	34.63	52.02
CDX91916	Canola	cytosol	24.18	45.51
KRH43543	Soybean	nucleus	36.72	45.39
KRH53884	Soybean	nucleus	31.04	44.44
KRH59559	Soybean	nucleus	35.22	44.36
KRH64060	Soybean	nucleus	31.34	43.21
CDX74329	Canola	cytosol	23.28	42.86
Bra000979.1-P	Field mustard	cytosol	23.28	42.16
AT4G00120.1	Thale cress	nucleus	24.48	41.41
PGSC0003DMT400073760	Potato	nucleus	30.75	39.31
Solyc11g005780.1.1	Tomato	nucleus	30.45	36.04
Zm00001d020705_P001	Maize	nucleus	24.78	34.3
Zm00001d050016_P001	Maize	nucleus	24.48	34.02
Zm00001d031781_P001	Maize	nucleus	23.58	31.47
Zm00001d005841_P001	Maize	nucleus	22.39	30.99
Zm00001d042988_P001	Maize	nucleus, plastid	15.22	24.17
Zm00001d042989_P001	Maize	nucleus, plastid	15.22	24.17
Zm00001d038863_P001	Maize	nucleus	22.39	18.94
Zm00001d043699_P001	Maize	nucleus	21.49	17.06
Zm00001d011187_P001	Maize	nucleus	21.19	16.51
Zm00001d044242_P001	Maize	nucleus	22.39	15.59
Zm00001d017804_P001	Maize	nucleus	12.84	14.58
Zm00001d021988_P001	Maize	nucleus	12.84	14.58
Zm00001d006733_P001	Maize	nucleus	12.24	14.34
Zm00001d048786_P001	Maize	nucleus, plastid	9.55	13.73
Zm00001d041351_P001	Maize	nucleus	11.34	12.5
Zm00001d008444_P001	Maize	nucleus	11.94	12.31
Zm00001d028085_P001	Maize	nucleus	10.45	11.82
Zm00001d048141_P001	Maize	cytosol	10.45	11.08

Protein Annotations

EntrezGene:100382671	MapMan:15.5.32	Gene3D:4.10.280.10	ProteinID:AQK78105.1	EMBL:BT065018	UniProt:C0P9P9
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF294
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000182F86F	EnsemblPlantsGene:Zm00001d035027	EnsemblPlants:Zm00001d035027_P001	EnsemblPlants:Zm00001d035027_T001
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

Transcription factor IND

Coordinates

chr6:-:2121872..2122879

Molecular Weight (calculated)

36262.2 Da

IEP (calculated)

7.059

GRAVY (calculated)

-0.853

Length

335 amino acids

Sequence
(BLAST)

001: MDNITHNSSS SSSWDLDMSL GSHHHPLLFD SHHNPGPPPP PPLPFHLSSS SHHPPPHPAH PHHHHPGLDP SPSSSLFPQP HHHHRLHHLG LDIDPASHSH
101: RHHEYGEQQE PGGGAGGHEH GHQEEARQQQ QHHEAGGGQE DRGAEDVEEE LGAMKEMMYR IAAMQPVDID PATIKKPRRR NVRISEDPQS VAARHRRERI
201: SERIRILQRL VPGGTKMDTA SMLDEAIRYI KFLKRQVQEL QHQPPQPQHQ QYPAAAGAGP STSVVGSAAP GRPGGVPPFL PLGPGPLIDW AGLVRPVDIH
301: GPTSSSSSSS MGGAHAALGF GFSSAGGGQS SHGMH

Best Arabidopsis Sequence Match ( AT5G09750.1 )
(BLAST)

001: MNNYNMNPSL FQNYTWNNII NSSNNNNKND DHHHQHNNDP IGMAMDQYTQ LHIFNPFSSS HFPPLSSSLT TTTLLSGDQE DDEDEEEPLE ELGAMKEMMY
101: KIAAMQSVDI DPATVKKPKR RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LNNNTGYTPP PPQDQASQAV
201: TTSWVSPPPP PSFGRGGRGV GELI

Arabidopsis Description

HEC3Transcription factor HEC3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXD8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.