Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d011187_P001 | Maize | nucleus | 70.27 | 78.6 |
| OQU87026 | Sorghum | nucleus | 71.52 | 74.62 |
| Os01t0566800-00 | Rice | nucleus | 59.67 | 61.59 |
| TraesCS3D01G208500.2 | Wheat | mitochondrion | 53.22 | 54.01 |
| TraesCS3A01G207300.2 | Wheat | extracellular | 52.39 | 53.96 |
| TraesCS3B01G233700.2 | Wheat | extracellular, mitochondrion, nucleus, plastid | 52.6 | 53.94 |
| HORVU3Hr1G048770.1 | Barley | plastid | 53.01 | 52.9 |
| GSMUA_Achr1P14400_001 | Banana | nucleus | 17.67 | 50.9 |
| GSMUA_AchrUn_... | Banana | nucleus | 20.79 | 36.63 |
| Zm00001d038863_P001 | Maize | nucleus | 26.82 | 32.58 |
| CDY62045 | Canola | nucleus | 22.25 | 31.94 |
| Bra031275.1-P | Field mustard | nucleus | 22.04 | 31.93 |
| CDY51449 | Canola | nucleus | 22.04 | 31.93 |
| Bra001826.1-P | Field mustard | nucleus | 21.41 | 31.79 |
| Zm00001d050016_P001 | Maize | nucleus | 15.8 | 31.54 |
| Zm00001d043699_P001 | Maize | nucleus | 27.44 | 31.28 |
| CDY32423 | Canola | nucleus | 21.41 | 31.21 |
| CDY48884 | Canola | nucleus | 21.0 | 30.15 |
| Zm00001d020705_P001 | Maize | nucleus | 14.97 | 29.75 |
| Solyc03g121240.1.1 | Tomato | nucleus | 23.49 | 29.74 |
| PGSC0003DMT400006453 | Potato | nucleus | 23.49 | 29.27 |
| AT3G21330.1 | Thale cress | nucleus | 22.66 | 29.22 |
| Zm00001d005841_P001 | Maize | nucleus | 14.55 | 28.93 |
| Zm00001d031781_P001 | Maize | nucleus | 14.35 | 27.49 |
| KRH47179 | Soybean | nucleus | 24.53 | 27.38 |
| KRH44227 | Soybean | nucleus | 24.74 | 26.86 |
| KRH23349 | Soybean | nucleus | 24.32 | 26.0 |
| KRH09982 | Soybean | nucleus | 23.7 | 25.62 |
| VIT_09s0002g02700.t01 | Wine grape | nucleus | 24.95 | 25.48 |
| Zm00001d049721_P001 | Maize | nucleus | 15.18 | 25.44 |
| Zm00001d035027_P001 | Maize | nucleus | 15.59 | 22.39 |
| Zm00001d042988_P001 | Maize | nucleus, plastid | 9.36 | 21.33 |
| Zm00001d042989_P001 | Maize | nucleus, plastid | 9.36 | 21.33 |
| Zm00001d017804_P001 | Maize | nucleus | 9.98 | 16.27 |
| Zm00001d021988_P001 | Maize | nucleus | 9.36 | 15.25 |
| Zm00001d048786_P001 | Maize | nucleus, plastid | 7.28 | 15.02 |
| Zm00001d041351_P001 | Maize | nucleus | 9.15 | 14.47 |
| Zm00001d006733_P001 | Maize | nucleus | 8.52 | 14.34 |
| Zm00001d008444_P001 | Maize | nucleus | 8.73 | 12.92 |
| Zm00001d028085_P001 | Maize | nucleus | 7.48 | 12.16 |
| Zm00001d048141_P001 | Maize | cytosol | 7.9 | 12.03 |
Protein Annotations
| EntrezGene:100192921 | MapMan:15.5.32 | Gene3D:4.10.280.10 | UniProt:A0A1D6NJV9 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | ProteinID:ONM40533.1 |
| PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF303 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI000221A1FF | EnsemblPlantsGene:Zm00001d044242 | EnsemblPlants:Zm00001d044242_P001 | EnsemblPlants:Zm00001d044242_T001 | InterPro:bHLH_dom | SEG:seg |
Description
bHLH-transcription factor 25Transcription factor bHLH87
Coordinates
chr3:-:222847014..222848459
Molecular Weight (calculated)
48733.2 Da
IEP (calculated)
7.286
GRAVY (calculated)
-0.219
Length
481 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHNLSDMTI LSEHAWGDEA GAVLLSPPEV GSVIEGGGGM TVLERLVLDE ALAAAILELQ AIQQAAPGPA SCAGKQQLAA GGGGGVVGAE AAVAFPSMMA
101: MAMAAPTPAY ADADVDAGVL QRQQHHHRPH AAMGMPSPDY DLAPAAAATP AVAVTAAAPP AFTTNTNAAV DSGCSGLVVL GRSPPPPVFS ASNETAATAS
201: LDCEHGGGGR GGGRRQRRPN RKRKAAAEAE RSRPVRVAAA AAQEESTLCS LLASTAPTTA GGIQIAFSTA AVHQQQHAAG GAGGAKTSAK PSSLSLSSSG
301: SSSNISFDGR NPARNGGGGG GGDPVYEPDT EALAQVKEMI YRAAAMRPVS LGSEDDAGAG AERPPRRRNV RISSDPQTVA ARQRRERISD RLRVLQKLVP
401: GGAKMDTASM LDEAASYLRF LKSQVRDLQT LDRRNYGAAS SNDAAATMAA VVGSSLSYNR GTGAMPAFTF PAAGETLRGA G
101: MAMAAPTPAY ADADVDAGVL QRQQHHHRPH AAMGMPSPDY DLAPAAAATP AVAVTAAAPP AFTTNTNAAV DSGCSGLVVL GRSPPPPVFS ASNETAATAS
201: LDCEHGGGGR GGGRRQRRPN RKRKAAAEAE RSRPVRVAAA AAQEESTLCS LLASTAPTTA GGIQIAFSTA AVHQQQHAAG GAGGAKTSAK PSSLSLSSSG
301: SSSNISFDGR NPARNGGGGG GGDPVYEPDT EALAQVKEMI YRAAAMRPVS LGSEDDAGAG AERPPRRRNV RISSDPQTVA ARQRRERISD RLRVLQKLVP
401: GGAKMDTASM LDEAASYLRF LKSQVRDLQT LDRRNYGAAS SNDAAATMAA VVGSSLSYNR GTGAMPAFTF PAAGETLRGA G
001: MEGLESVYAQ AMYGMTRESK IMEHQGSDLI WGGNELMARE LCSSSSYHHQ LINPNLSSCF MSDLGVLGEI QQQQHVGNRA SSIDPSSLDC LLSATSNSNN
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC
Arabidopsis Description
BHLH87Transcription factor bHLH87 [Source:UniProtKB/Swiss-Prot;Acc:Q8S3D2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.