Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- peroxisome 1
- plastid 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G233700.2 | Wheat | extracellular, mitochondrion, nucleus, plastid | 85.48 | 87.85 |
| TraesCS3A01G207300.2 | Wheat | extracellular | 84.65 | 87.37 |
| TraesCS3D01G208500.2 | Wheat | mitochondrion | 85.89 | 87.34 |
| Zm00001d011187_P001 | Maize | nucleus | 53.53 | 60.0 |
| Os01t0566800-00 | Rice | nucleus | 57.47 | 59.44 |
| Zm00001d044242_P001 | Maize | nucleus | 52.9 | 53.01 |
| OQU87026 | Sorghum | nucleus | 50.62 | 52.93 |
| GSMUA_Achr1P14400_001 | Banana | nucleus | 17.43 | 50.3 |
| HORVU1Hr1G043780.1 | Barley | mitochondrion, nucleus | 5.39 | 43.33 |
| GSMUA_AchrUn_... | Banana | nucleus | 21.37 | 37.73 |
| Bra001826.1-P | Field mustard | nucleus | 21.37 | 31.79 |
| HORVU7Hr1G054880.1 | Barley | nucleus | 14.52 | 31.53 |
| CDY32423 | Canola | nucleus | 21.37 | 31.21 |
| Bra031275.1-P | Field mustard | nucleus | 21.37 | 31.02 |
| CDY51449 | Canola | nucleus | 21.37 | 31.02 |
| HORVU5Hr1G068110.1 | Barley | nucleus | 15.15 | 30.67 |
| PGSC0003DMT400006453 | Potato | nucleus | 24.27 | 30.31 |
| CDY62045 | Canola | nucleus | 20.95 | 30.15 |
| Solyc03g121240.1.1 | Tomato | nucleus | 23.65 | 30.0 |
| HORVU3Hr1G066600.2 | Barley | nucleus | 25.1 | 29.88 |
| CDY48884 | Canola | nucleus | 20.75 | 29.85 |
| HORVU1Hr1G079450.1 | Barley | nucleus | 23.86 | 28.75 |
| AT3G21330.1 | Thale cress | nucleus | 21.78 | 28.15 |
| HORVU0Hr1G019640.1 | Barley | cytosol | 10.79 | 27.96 |
| KRH23349 | Soybean | nucleus | 23.65 | 25.33 |
| KRH47179 | Soybean | nucleus | 22.61 | 25.29 |
| KRH09982 | Soybean | nucleus | 23.24 | 25.17 |
| KRH44227 | Soybean | nucleus | 22.61 | 24.61 |
| VIT_09s0002g02700.t01 | Wine grape | nucleus | 23.03 | 23.57 |
| HORVU3Hr1G087710.1 | Barley | nucleus | 10.17 | 23.33 |
| HORVU7Hr1G077270.3 | Barley | cytosol | 14.32 | 20.35 |
| HORVU2Hr1G035190.9 | Barley | nucleus | 9.54 | 15.38 |
| HORVU7Hr1G046580.1 | Barley | plasma membrane, vacuole | 9.75 | 14.2 |
| HORVU5Hr1G018100.1 | Barley | cytosol, mitochondrion, nucleus | 9.13 | 14.1 |
| HORVU5Hr1G097520.1 | Barley | nucleus | 8.51 | 14.04 |
| HORVU4Hr1G069820.2 | Barley | nucleus | 9.54 | 13.98 |
| HORVU6Hr1G069690.3 | Barley | cytosol | 7.26 | 10.39 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G048770.1 | EnsemblPlantsGene:HORVU3Hr1G048770 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF303 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000B47A4FD | UniProt:A0A287KZ72 | MapMan:15.5.32 | : | : |
Description
No Description!
Coordinates
chrchr3H:+:338004044..338006390
Molecular Weight (calculated)
50139.5 Da
IEP (calculated)
8.042
GRAVY (calculated)
-0.255
Length
482 amino acids
Sequence
(BLAST)
(BLAST)
001: MRECSSLCCS NISTRTLASL ASPPPPPPAA AATAAECSPR LTCVPLIKGG KMDPGLCNDM ILSEIAWNSG GGAAGDVVNV MDGSGAMTVL ERLVLDEALA
101: AAIMELQGIQ VPCGGGKAIP APMAAGGGGL AFGATGTGTG PVTPAYAEVD GIVLQRQQHQ HGHQGVMGMP VDYDLVPAPR AVTLATVPAA APSFTKGAAA
201: AVDRAGIVDA AVFHTGNKAP GTTRQWDQAN GAAKRQRRSS RKRRAADAPC PAADGHSQSQ ENPLCSLLAS TSTGDGGIQI AFSTGGGAAP CSKRTKPSLT
301: LSSTSSSISF DGRSSVNNGC DDVPRYEPDT EALAQVKEMI YRAAAMRPVS LGAEEEDTGE RPSRRNVRIS SDPQTVAARQ RRERISERLR VLQKLVPGGA
401: KMDTASMLDE AANYLRFLKS QIRELQTLDR RNYGANAILN SSSTTTMAPQ MSYNNMPAFA FPATGASETL RGGEEAFMSS RF
101: AAIMELQGIQ VPCGGGKAIP APMAAGGGGL AFGATGTGTG PVTPAYAEVD GIVLQRQQHQ HGHQGVMGMP VDYDLVPAPR AVTLATVPAA APSFTKGAAA
201: AVDRAGIVDA AVFHTGNKAP GTTRQWDQAN GAAKRQRRSS RKRRAADAPC PAADGHSQSQ ENPLCSLLAS TSTGDGGIQI AFSTGGGAAP CSKRTKPSLT
301: LSSTSSSISF DGRSSVNNGC DDVPRYEPDT EALAQVKEMI YRAAAMRPVS LGAEEEDTGE RPSRRNVRIS SDPQTVAARQ RRERISERLR VLQKLVPGGA
401: KMDTASMLDE AANYLRFLKS QIRELQTLDR RNYGANAILN SSSTTTMAPQ MSYNNMPAFA FPATGASETL RGGEEAFMSS RF
001: MEGLESVYAQ AMYGMTRESK IMEHQGSDLI WGGNELMARE LCSSSSYHHQ LINPNLSSCF MSDLGVLGEI QQQQHVGNRA SSIDPSSLDC LLSATSNSNN
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC
Arabidopsis Description
BHLH87Transcription factor bHLH87 [Source:UniProtKB/Swiss-Prot;Acc:Q8S3D2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.