Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G169700.1 | Wheat | cytosol | 86.56 | 89.94 |
| TraesCS7B01G074900.1 | Wheat | nucleus | 88.71 | 89.67 |
| TraesCS7D01G170900.1 | Wheat | nucleus | 88.71 | 89.19 |
| HORVU1Hr1G043780.1 | Barley | mitochondrion, nucleus | 12.37 | 38.33 |
| GSMUA_Achr8P23350_001 | Banana | nucleus | 31.72 | 38.06 |
| HORVU7Hr1G054880.1 | Barley | nucleus | 37.1 | 31.08 |
| HORVU5Hr1G068110.1 | Barley | nucleus | 36.56 | 28.57 |
| HORVU3Hr1G087710.1 | Barley | nucleus | 23.66 | 20.95 |
| HORVU7Hr1G077270.3 | Barley | cytosol | 30.65 | 16.81 |
| HORVU1Hr1G079450.1 | Barley | nucleus | 31.18 | 14.5 |
| HORVU3Hr1G066600.2 | Barley | nucleus | 31.18 | 14.32 |
| HORVU2Hr1G035190.9 | Barley | nucleus | 19.35 | 12.04 |
| HORVU5Hr1G097520.1 | Barley | nucleus | 17.74 | 11.3 |
| HORVU5Hr1G018100.1 | Barley | cytosol, mitochondrion, nucleus | 18.28 | 10.9 |
| HORVU3Hr1G048770.1 | Barley | plastid | 27.96 | 10.79 |
| HORVU4Hr1G069820.2 | Barley | nucleus | 17.2 | 9.73 |
| HORVU7Hr1G046580.1 | Barley | plasma membrane, vacuole | 16.67 | 9.37 |
| HORVU6Hr1G069690.3 | Barley | cytosol | 9.68 | 5.34 |
Protein Annotations
| EnsemblPlants:HORVU0Hr1G019640.1 | EnsemblPlantsGene:HORVU0Hr1G019640 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF303 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI0002964EB6 | UniProt:M0W423 | MapMan:15.5.32 | : | : | : |
Description
No Description!
Coordinates
chrchrUn:+:103668816..103669751
Molecular Weight (calculated)
20315.3 Da
IEP (calculated)
8.277
GRAVY (calculated)
-0.306
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLDMAMDMT NQEQLMHTIS QLDSALTYLA SPSTSPPHEP PALVPPYPSC ATSAVTPSVV TMPVLVPPPA AANPEHTATR QLVVGIHSAA DVERPRRRNG
101: RVSSEPQSVA ARLRRERVSQ RMRALQRLVP GGARLDTASM LEEAVRYVRF LKSHVQALEQ AAAAVHGRRV DDVAAGDFYH HCPYHA
101: RVSSEPQSVA ARLRRERVSQ RMRALQRLVP GGARLDTASM LEEAVRYVRF LKSHVQALEQ AAAAVHGRRV DDVAAGDFYH HCPYHA
001: MEGLESVYAQ AMYGMTRESK IMEHQGSDLI WGGNELMARE LCSSSSYHHQ LINPNLSSCF MSDLGVLGEI QQQQHVGNRA SSIDPSSLDC LLSATSNSNN
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC
101: TSTEDDEGIS VLFSDCQTLW SFGGVSSAES ENREITTETT TTIKPKPLKR NRGGDGGTTE TTTTTTKPKS LKRNRGDETG SHFSLVHPQD DSEKGGFKLI
201: YDENQSKSKK PRTEKERGGS SNISFQHSTC LSDNVEPDAE AIAQMKEMIY RAAAFRPVNF GLEIVEKPKR KNVKISTDPQ TVAARQRRER ISEKIRVLQT
301: LVPGGTKMDT ASMLDEAANY LKFLRAQVKA LENLRPKLDQ TNLSFSSAPT SFPLFHPSFL PLQNPNQIHH PEC
Arabidopsis Description
BHLH87Transcription factor bHLH87 [Source:UniProtKB/Swiss-Prot;Acc:Q8S3D2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.