Factsheet for GSMUA_Achr8P23350_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P18580_001	Banana	cytosol	43.23	54.92
GSMUA_Achr9P29130_001	Banana	nucleus	45.16	45.75
GSMUA_Achr7P23410_001	Banana	endoplasmic reticulum, extracellular, vacuole	45.16	41.67
GSMUA_Achr11P...	Banana	nucleus	47.1	38.22
GSMUA_Achr5P01290_001	Banana	nucleus	46.45	36.36
GSMUA_Achr10P...	Banana	nucleus	53.55	34.3
TraesCS7A01G169700.1	Wheat	cytosol	38.71	33.52
GSMUA_Achr9P15380_001	Banana	nucleus	52.9	33.47
TraesCS7B01G074900.1	Wheat	nucleus	38.71	32.61
TraesCS7D01G170900.1	Wheat	nucleus	38.71	32.43
GSMUA_Achr1P14400_001	Banana	nucleus	34.19	31.74
HORVU0Hr1G019640.1	Barley	cytosol	38.06	31.72
GSMUA_Achr3P01250_001	Banana	cytosol, nucleus, plastid	23.87	30.58
GSMUA_Achr6P16890_001	Banana	nucleus	25.16	28.68
GSMUA_Achr4P23240_001	Banana	nucleus	23.23	24.66
GSMUA_Achr4P18820_001	Banana	nucleus	27.74	20.98
GSMUA_AchrUn_...	Banana	nucleus	36.13	20.51
GSMUA_Achr3P25950_001	Banana	nucleus	40.0	17.61
GSMUA_Achr8P24970_001	Banana	nucleus	38.06	16.95
GSMUA_AchrUn_...	Banana	nucleus	27.1	14.05
GSMUA_Achr9P09600_001	Banana	nucleus	24.52	13.77
GSMUA_Achr6P07760_001	Banana	nucleus	24.52	13.24
GSMUA_Achr2P17130_001	Banana	nucleus	26.45	12.97
GSMUA_Achr3P18870_001	Banana	nucleus	27.74	12.43
GSMUA_Achr2P22860_001	Banana	nucleus	25.81	12.42
GSMUA_Achr10P...	Banana	nucleus	23.87	12.42
GSMUA_Achr6P09370_001	Banana	nucleus	24.52	11.21

Protein Annotations

EnsemblPlants:GSMUA_Achr8P23350_001	EnsemblPlants:GSMUA_Achr8T23350_001	EnsemblPlantsGene:GSMUA_Achr8G23350_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR12565	PANTHER:PTHR12565:SF303	PFAM:PF00010	PFscan:PS50888	SEG:seg
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000295FFEC	UniProt:M0TSY8	MapMan:15.5.32	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G23350_001]

Coordinates

chr8:-:27828929..27829396

Molecular Weight (calculated)

17343.8 Da

IEP (calculated)

9.315

GRAVY (calculated)

-0.502

Length

155 amino acids

Sequence
(BLAST)

001: MLQLAETDQV STDPLQEYLP TPTFAAPQTP TNLSGNGDLS LVREMRFQIA AMQPIDIDPE SARPPRKRRN VRVSKDPQSV AARLRRERIS ERIRVLQRMV
101: PGGTKMDTAS MLDEAVRYVK FLQTQVQSLE RAAAAGAVPA HGNCCSCFRD TYQLQ

Best Arabidopsis Sequence Match ( AT3G50330.1 )
(BLAST)

001: MDNSDILMNM MMQQMEKLPE HFSNSNPNPN PHNIMMLSES NTHPFFFNPT HSHLPFDQTM PHHQPGLNFR YAPSPSSSLP EKRGGCSDNA NMAAMREMIF
101: RIAVMQPIHI DPESVKPPKR KNVRISKDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIHY VKFLKKQVQS LEEHAVVNGG GMTAVAGGAL
201: AGTVGGGYGG KGCGIMRSDH HQMLGNAQIL R

Arabidopsis Description

HEC2Transcription factor HEC2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SND4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.