Factsheet for GSMUA_Achr6P18580_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P10450_001
GSMUA_Achr5P14210_001
GSMUA_Achr6P03790_001
GSMUA_Achr7P08700_001
GSMUA_Achr7P20810_001
GSMUA_Achr8P15670_001
GSMUA_Achr9P11300_001
GSMUA_Achr9P13880_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00120.1	GSMUA_Achr5P14210_001	AT2G38270.1	21798944
AT4G00120.1	GSMUA_Achr1P10450_001	AT3G21150.1	21798944
AT4G00120.1	GSMUA_Achr6P03790_001	AT3G21150.1	21798944
AT4G00120.1	GSMUA_Achr7P08700_001	AT3G21150.1	21798944
AT4G00120.1	GSMUA_Achr9P13880_001	AT3G21150.1	21798944
AT4G00120.1	GSMUA_AchrUn_...	AT3G21150.1	21798944
AT5G09750.1	GSMUA_Achr10P...	AT4G36930.1	17855426
AT5G09750.1	GSMUA_Achr7P20810_001	AT4G36930.1	17855426
AT5G09750.1	GSMUA_Achr8P15670_001	AT4G36930.1	17855426
AT5G09750.1	GSMUA_Achr9P11300_001	AT4G36930.1	17855426

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P23410_001	Banana	endoplasmic reticulum, extracellular, vacuole	70.49	51.19
GSMUA_Achr5P01290_001	Banana	nucleus	77.05	47.47
GSMUA_Achr11P...	Banana	nucleus	72.13	46.07
Bra028620.1-P	Field mustard	nucleus	78.69	44.86
CDX85799	Canola	nucleus	78.69	44.86
CDY64847	Canola	nucleus	78.69	44.65
GSMUA_Achr8P23350_001	Banana	nucleus	54.92	43.23
AT5G09750.1	Thale cress	nucleus	78.69	42.86
GSMUA_Achr9P29130_001	Banana	nucleus	51.64	41.18
CDY21597	Canola	nucleus	74.59	40.81
CDX91916	Canola	cytosol	58.2	39.89
VIT_04s0044g01040.t01	Wine grape	nucleus	70.49	38.56
AT4G00120.1	Thale cress	nucleus	60.66	37.37
CDX74329	Canola	cytosol	55.74	37.36
Bra000979.1-P	Field mustard	cytosol	55.74	36.76
GSMUA_Achr1P14400_001	Banana	nucleus	47.54	34.73
KRH53884	Soybean	nucleus	65.57	34.19
KRH64060	Soybean	nucleus	67.21	33.74
KRH59559	Soybean	nucleus	72.95	33.46
KRH43543	Soybean	nucleus	72.95	32.84
GSMUA_Achr3P01250_001	Banana	cytosol, nucleus, plastid	31.15	31.41
PGSC0003DMT400073760	Potato	nucleus	66.39	30.92
Os08t0108500-01	Rice	nucleus	77.05	30.72
Zm00001d049721_P001	Maize	nucleus	72.13	30.66
TraesCS7A01G323000.1	Wheat	nucleus	76.23	29.71
TraesCS7D01G319600.1	Wheat	nucleus	76.23	29.34
TraesCS7B01G223900.1	Wheat	nucleus	76.23	28.97
Solyc11g005780.1.1	Tomato	nucleus	66.39	28.62
GSMUA_Achr9P15380_001	Banana	nucleus	57.38	28.57
GSMUA_Achr10P...	Banana	nucleus	56.56	28.51
Zm00001d035027_P001	Maize	nucleus	77.05	28.06
GSMUA_Achr6P16890_001	Banana	nucleus	31.15	27.94
EES14382	Sorghum	nucleus	76.23	26.72
HORVU7Hr1G077270.3	Barley	cytosol	73.77	26.55
GSMUA_Achr4P23240_001	Banana	nucleus	31.15	26.03
GSMUA_AchrUn_...	Banana	nucleus	50.82	22.71
GSMUA_Achr4P18820_001	Banana	nucleus	36.89	21.95
GSMUA_Achr8P24970_001	Banana	nucleus	50.82	17.82
GSMUA_Achr3P25950_001	Banana	nucleus	50.82	17.61
GSMUA_Achr9P09600_001	Banana	nucleus	30.33	13.41
GSMUA_Achr10P...	Banana	nucleus	31.97	13.09
GSMUA_AchrUn_...	Banana	nucleus	31.97	13.04
GSMUA_Achr6P07760_001	Banana	nucleus	29.51	12.54
GSMUA_Achr2P22860_001	Banana	nucleus	31.97	12.11
GSMUA_Achr3P18870_001	Banana	nucleus	33.61	11.85
GSMUA_Achr2P17130_001	Banana	nucleus	30.33	11.71
GSMUA_Achr6P09370_001	Banana	nucleus	31.97	11.5

Protein Annotations

EnsemblPlants:GSMUA_Achr6P18580_001	EnsemblPlants:GSMUA_Achr6T18580_001	EnsemblPlantsGene:GSMUA_Achr6G18580_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF125	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000295D853	UniProt:M0T856	MapMan:15.5.32	:	:

Description

Transcription factor HEC3 [Source:GMGC_GENE;Acc:GSMUA_Achr6G18580_001]

Coordinates

chr6:+:12823252..12823858

Molecular Weight (calculated)

14083.4 Da

IEP (calculated)

11.410

GRAVY (calculated)

-0.689

Length

122 amino acids

Sequence
(BLAST)

001: MENNISSNNE EALGAMKEMM YRIAAMQPVD IDPSTIKKPM RRNVRISDDP QSVAARHRRE RISERIRILQ RLVPGGTKMD TASMLDEAIR YVKFLKRQVH
101: DLHGPRRLRL VPLLRPPPPP PP

Best Arabidopsis Sequence Match ( AT5G09750.1 )
(BLAST)

001: MNNYNMNPSL FQNYTWNNII NSSNNNNKND DHHHQHNNDP IGMAMDQYTQ LHIFNPFSSS HFPPLSSSLT TTTLLSGDQE DDEDEEEPLE ELGAMKEMMY
101: KIAAMQSVDI DPATVKKPKR RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LNNNTGYTPP PPQDQASQAV
201: TTSWVSPPPP PSFGRGGRGV GELI

Arabidopsis Description

HEC3Transcription factor HEC3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXD8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.