Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G00120.1 | KRH65709 | AT2G38270.1 | 21798944 |
| AT4G00120.1 | KRH75953 | AT2G38270.1 | 21798944 |
| AT4G00120.1 | KRH44613 | AT3G21150.1 | 21798944 |
| AT4G00120.1 | KRH47291 | AT3G21150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH53884 | Soybean | nucleus | 78.19 | 81.2 |
| GSMUA_Achr6P18580_001 | Banana | cytosol | 33.74 | 67.21 |
| VIT_04s0044g01040.t01 | Wine grape | nucleus | 48.15 | 52.47 |
| GSMUA_Achr7P23410_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 35.39 | 51.19 |
| GSMUA_Achr5P01290_001 | Banana | nucleus | 40.33 | 49.49 |
| GSMUA_Achr11P... | Banana | nucleus | 38.68 | 49.21 |
| PGSC0003DMT400073760 | Potato | nucleus | 48.56 | 45.04 |
| CDX91916 | Canola | cytosol | 32.92 | 44.94 |
| KRH59559 | Soybean | nucleus | 47.74 | 43.61 |
| KRH43543 | Soybean | nucleus | 48.56 | 43.54 |
| Solyc11g005780.1.1 | Tomato | nucleus | 50.62 | 43.46 |
| KRH52087 | Soybean | cytosol, mitochondrion, nucleus | 16.46 | 43.01 |
| CDX74329 | Canola | cytosol | 32.1 | 42.86 |
| Bra000979.1-P | Field mustard | cytosol | 32.1 | 42.16 |
| AT4G00120.1 | Thale cress | nucleus | 33.74 | 41.41 |
| KRH28464 | Soybean | nucleus | 34.98 | 35.12 |
| Zm00001d049721_P001 | Maize | nucleus | 40.74 | 34.49 |
| KRH77007 | Soybean | nucleus | 35.39 | 34.26 |
| Os08t0108500-01 | Rice | nucleus | 42.39 | 33.66 |
| TraesCS7A01G323000.1 | Wheat | nucleus | 43.21 | 33.55 |
| TraesCS7D01G319600.1 | Wheat | nucleus | 42.8 | 32.81 |
| TraesCS7B01G223900.1 | Wheat | nucleus | 43.21 | 32.71 |
| KRH57944 | Soybean | nucleus | 33.74 | 32.28 |
| KRH61303 | Soybean | nucleus | 34.98 | 32.2 |
| KRH04603 | Soybean | nucleus | 36.63 | 31.56 |
| KRH52010 | Soybean | nucleus | 33.33 | 31.4 |
| Zm00001d035027_P001 | Maize | nucleus | 43.21 | 31.34 |
| EES14382 | Sorghum | nucleus | 43.62 | 30.46 |
| HORVU7Hr1G077270.3 | Barley | cytosol | 41.56 | 29.79 |
| KRH75991 | Soybean | nucleus, plastid | 21.4 | 29.21 |
| KRH65648 | Soybean | nucleus, plastid | 21.81 | 29.12 |
| KRH00301 | Soybean | nucleus, plastid | 19.75 | 27.27 |
| KRH49427 | Soybean | nucleus, plastid | 18.52 | 25.57 |
| KRH47179 | Soybean | nucleus | 30.86 | 17.4 |
| KRH44227 | Soybean | nucleus | 30.45 | 16.7 |
| KRH09982 | Soybean | nucleus | 30.04 | 16.4 |
| KRH23349 | Soybean | nucleus | 30.04 | 16.22 |
| KRG91108 | Soybean | nucleus | 21.81 | 15.01 |
| KRH35668 | Soybean | nucleus | 21.4 | 14.77 |
| KRH15121 | Soybean | nucleus | 17.7 | 14.68 |
| KRH15444 | Soybean | nucleus | 20.99 | 14.57 |
| KRH35669 | Soybean | nucleus | 21.4 | 14.53 |
| KRH05600 | Soybean | nucleus | 20.99 | 14.45 |
| KRG91107 | Soybean | nucleus | 20.99 | 14.25 |
| KRH73015 | Soybean | nucleus | 17.28 | 14.24 |
| KRH30960 | Soybean | nucleus | 18.93 | 13.57 |
| KRG97923 | Soybean | nucleus | 18.11 | 12.98 |
| KRH61404 | Soybean | nucleus | 17.7 | 12.95 |
Protein Annotations
| EntrezGene:100779374 | MapMan:15.5.32 | Gene3D:4.10.280.10 | EMBL:ACUP02002737 | EnsemblPlantsGene:GLYMA_04G214100 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| UniProt:K7KLH5 | EnsemblPlants:KRH64060 | ProteinID:KRH64060 | ProteinID:KRH64060.1 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF125 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000233A056 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr4:-:48576391..48577122
Molecular Weight (calculated)
27730.9 Da
IEP (calculated)
6.576
GRAVY (calculated)
-0.611
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MDINESITST FSNVVNSTWN HEKMGTEEHN IILHDHHQIP KGVGIWPHYN YPLHNIQPSS SSNVAPSSSN FLTDILGVHF EEEEDEEEEE LGAMKEMMYK
101: MAVMQPVDID PASVRKPKRR NVRISDDPQS VAARHRRERI SEKIRILQRL VPGGTKMDTA SMLDEAIRYV KFLKRQIRFL QSTPPPPINC NVGAAPNSEY
201: YWPFAPNMLH SSTTTFIDMP VIGMEFNTRS HGHAGDSIHL RQS
101: MAVMQPVDID PASVRKPKRR NVRISDDPQS VAARHRRERI SEKIRILQRL VPGGTKMDTA SMLDEAIRYV KFLKRQIRFL QSTPPPPINC NVGAAPNSEY
201: YWPFAPNMLH SSTTTFIDMP VIGMEFNTRS HGHAGDSIHL RQS
001: MNNYNMNPSL FQNYTWNNII NSSNNNNKND DHHHQHNNDP IGMAMDQYTQ LHIFNPFSSS HFPPLSSSLT TTTLLSGDQE DDEDEEEPLE ELGAMKEMMY
101: KIAAMQSVDI DPATVKKPKR RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LNNNTGYTPP PPQDQASQAV
201: TTSWVSPPPP PSFGRGGRGV GELI
101: KIAAMQSVDI DPATVKKPKR RNVRISDDPQ SVAARHRRER ISERIRILQR LVPGGTKMDT ASMLDEAIRY VKFLKRQIRL LNNNTGYTPP PPQDQASQAV
201: TTSWVSPPPP PSFGRGGRGV GELI
Arabidopsis Description
HEC3Transcription factor HEC3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.