CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16959
KRH53667
KRH64261

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38270.1	KRH16959	AT3G49580.1	21798944
AT2G38270.1	KRH53667	AT3G49580.1	21798944
AT2G38270.1	KRH64261	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65709	Soybean	nucleus, plastid	85.31	92.54
EES16486	Sorghum	cytosol	34.06	74.15
VIT_08s0105g00490.t01	Wine grape	plastid	63.12	68.01
Solyc09g005620.2.1	Tomato	plastid	61.88	67.81
PGSC0003DMT400011370	Potato	plastid	62.19	67.23
AT2G38270.1	Thale cress	plastid	55.94	61.09
Bra000047.1-P	Field mustard	plastid	55.62	60.54
CDY14473	Canola	plastid	54.38	60.42
CDY07744	Canola	plastid	54.69	59.93
Os12t0175500-01	Rice	plastid	51.56	57.89
EES09081	Sorghum	plastid	50.31	56.1
TraesCS5D01G159600.1	Wheat	plastid	50.0	55.36
TraesCS5B01G152900.1	Wheat	plastid	50.0	55.36
Zm00001d044606_P001	Maize	plastid	49.38	54.11
Zm00001d005094_P001	Maize	plastid	48.75	53.61
GSMUA_Achr5P14210_001	Banana	plastid	54.38	53.54
HORVU5Hr1G048120.8	Barley	cytosol, plastid	50.0	50.16
TraesCS5A01G154700.1	Wheat	mitochondrion	50.31	41.39
KRH40339	Soybean	cytosol	2.19	41.18
KRH09770	Soybean	cytosol	6.56	39.62
KRH40338	Soybean	plastid	17.81	35.85
KRH00894	Soybean	plastid	19.69	35.59
KRH47491	Soybean	cytosol, plastid	16.56	32.92
KRH44417	Soybean	cytosol, plastid	16.25	32.3
KRH23549	Soybean	mitochondrion	15.0	29.63
KRH20463	Soybean	nucleus	20.0	13.06

Protein Annotations

EntrezGene:100790493	Gene3D:3.40.1440.10	Gene3D:3.40.30.10	MapMan:35.1	EMBL:ACUP02000530	InterPro:GIY-YIG_endonuc_sf
EnsemblPlantsGene:GLYMA_01G119900	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:GRX_PICOT-like	InterPro:Glutaredoxin	UniProt:I1J7D2
InterPro:IPR002109	InterPro:IPR035901	EnsemblPlants:KRH75953	ProteinID:KRH75953	ProteinID:KRH75953.1	InterPro:Monothiol_GRX-rel
PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10293	PANTHER:PTHR10293:SF45	SUPFAM:SSF52833	TIGRFAMs:TIGR00365
InterPro:Thioredoxin-like_sf	UniParc:UPI00023374E6	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:41239941..41242551

Molecular Weight (calculated)

35482.2 Da

IEP (calculated)

8.186

GRAVY (calculated)

-0.404

Length

320 amino acids

Sequence
(BLAST)

001: MQHSLKRRNE TDSCFFLSRY RHRSSMATLN LSSLQALSSH RLCSSFPQNT PTPSFNFQLK PSINPRPISL KPYVSEKPRA RVVALAVKSL GDTEALAVSP
101: ENDGPAGELP SGAGVYAVYD TNGDVQFIGL SRNIAASVAA HWKSVPELCG SVKAGVVDEP DRETLTQAWK SWMEEYIKDS GKVPPGNESG NATWVRQAPK
201: RKPDLRLTPG RRMQLTVPLE NLIDGLVKEN KVVAFIKGPR SAPLCGFSQR VIAILENEGV DYESVNVLDE EYNYELRETL KKYSNWPTFP QIFVDGELVG
301: GCDILTSMYE KGELASLFKK

Best Arabidopsis Sequence Match ( AT2G38270.1 )
(BLAST)

001: MAAITISSSL HASASPRVVR PHVSRNTPVI TLYSRFTPSF SFPSLSFTLR DTAPSRRRSF FIASAVKSLT ETELLPITEA DSIPSASGVY AVYDKSDELQ
101: FVGISRNIAA SVSAHLKSVP ELCGSVKVGI VEEPDKAVLT QAWKLWIEEH IKVTGKVPPG NKSGNNTFVK QTPRKKSDIR LTPGRHVELT VPLEELIDRL
201: VKESKVVAFI KGSRSAPQCG FSQRVVGILE SQGVDYETVD VLDDEYNHGL RETLKNYSNW PTFPQIFVKG ELVGGCDILT SMYENGELAN ILN

Arabidopsis Description

GRXS16Bifunctional monothiol glutaredoxin-S16, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H7F6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.