CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH02231
KRH06004
KRH12132
KRH17506
KRH37127
KRH43388
KRH50884
KRH59529

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15660.1	KRH02231	AT4G15730.1	21798944
AT3G15660.1	KRH12132	AT4G15730.1	21798944
AT3G15660.1	KRH37127	AT4G15730.1	21798944
AT3G15660.1	KRH50884	AT4G15730.1	21798944
AT3G15660.1	KRH43388	AT5G09830.1	21798944
AT3G15660.1	KRH59529	AT5G09830.1	21798944
AT3G15660.1	KRH06004	AT5G42220.1	21798944
AT3G15660.1	KRH17506	AT5G42220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47491	Soybean	cytosol, plastid	94.41	94.41
KRH23549	Soybean	mitochondrion	81.99	81.48
KRH09770	Soybean	cytosol	26.71	81.13
VIT_09s0002g06040.t01	Wine grape	mitochondrion	73.29	69.41
Solyc06g067960.2.1	Tomato	plastid	71.43	67.65
PGSC0003DMT400073383	Potato	mitochondrion	70.19	66.47
CDY30094	Canola	mitochondrion	65.84	64.24
AT3G15660.1	Thale cress	mitochondrion	65.22	62.13
Bra027220.1-P	Field mustard	mitochondrion	65.84	61.99
CDX97692	Canola	mitochondrion	65.84	61.99
CDY21857	Canola	mitochondrion	63.35	61.08
Bra021125.1-P	Field mustard	mitochondrion	62.73	60.48
CDY20141	Canola	mitochondrion	62.11	59.88
KXG31737	Sorghum	mitochondrion	55.9	48.65
Zm00001d008736_P001	Maize	mitochondrion	50.31	48.5
Os01t0530400-01	Rice	mitochondrion	54.66	47.57
Os01t0174900-01	Rice	mitochondrion	53.42	46.49
GSMUA_Achr10P...	Banana	mitochondrion	52.8	44.27
TraesCS3A01G127900.1	Wheat	mitochondrion	51.55	43.92
TraesCS3D01G128900.1	Wheat	mitochondrion	50.31	43.78
EES12336	Sorghum	mitochondrion	48.45	41.05
Zm00001d025657_P001	Maize	mitochondrion	46.58	38.86
TraesCS3B01G147100.1	Wheat	mitochondrion	50.31	36.82
KRH40339	Soybean	cytosol	3.73	35.29
GSMUA_Achr7P08380_001	Banana	plastid	57.14	33.82
HORVU3Hr1G023970.2	Barley	cytosol	51.55	32.05
KRH40338	Soybean	plastid	29.81	30.19
KRH00894	Soybean	plastid	32.3	29.38
KRH65709	Soybean	nucleus, plastid	32.92	17.97
KRH75953	Soybean	nucleus	32.3	16.25
KRH20463	Soybean	nucleus	27.95	9.18

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	UniProt:A0A0R0IQ81	EMBL:ACUP02004928	EnsemblPlantsGene:GLYMA_08G209900	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0015036	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0055114
InterPro:GRX_PICOT-like	InterPro:Glutaredoxin	InterPro:IPR002109	EnsemblPlants:KRH44417	ProteinID:KRH44417	ProteinID:KRH44417.1
InterPro:Monothiol_GRX	InterPro:Monothiol_GRX-rel	PFAM:PF00462	PIRSF:PIRSF005894	PFscan:PS51354	PANTHER:PTHR10293
PANTHER:PTHR10293:SF54	SUPFAM:SSF52833	TIGRFAMs:TIGR00365	InterPro:Thioredoxin-like_sf	UniParc:UPI0001890D0F	:

Description

hypothetical protein

Coordinates

chr8:-:16995014..16997243

Molecular Weight (calculated)

17905.4 Da

IEP (calculated)

7.505

GRAVY (calculated)

-0.284

Length

161 amino acids

Sequence
(BLAST)

001: MATSLSNMFL KGIAARSLSR PLNGLFYCTR YSTTVSNDSD THDDFKPANK LENSGISLSN VIEQDVKDNP VMVYMKGVPD FPQCGFSSLA VRVLKHYDVP
101: ISARNILDDP DLKNAVKAFS NWPTFPQIFI KGEFIGGSDI VLNMHQTGEL KEKLKDITSK Q

Best Arabidopsis Sequence Match ( AT3G15660.2 )
(BLAST)

001: MAASLSSRLI KGIANLKAVR SSRLTSASVY QNGMMRFSST VPSDSDTHDD FKPTQKVPPD STDSLKDIVE NDVKDNPVMI YMKGVPESPQ CGFSSLAVRV
101: LQQYNVPISS RNILEDQELK NAVKSFSHWP TFPQIFIKGE FIGGSDIILN MHKEGELEQK LKDVSGNQD

Arabidopsis Description

GRXS15GRX4 [Source:UniProtKB/TrEMBL;Acc:A0A178VHP8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.