CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER93093
EES03940
KXG25466
KXG34945
KXG39393
OQU77880
OQU88150
OQU90452

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15660.1	KXG39393	AT4G15730.1	21798944
AT3G15660.1	OQU77880	AT4G15730.1	21798944
AT3G15660.1	OQU90452	AT4G15730.1	21798944
AT3G15660.1	EES03940	AT5G09830.1	21798944
AT3G15660.1	EER93093	AT5G13280.1	21798944
AT3G15660.1	KXG34945	AT5G13280.1	21798944
AT3G15660.1	OQU88150	AT5G13280.1	21798944
AT3G15660.1	KXG25466	AT5G42220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025657_P001	Maize	mitochondrion	87.89	86.53
KXG31737	Sorghum	mitochondrion	71.58	73.51
TraesCS3D01G128900.1	Wheat	mitochondrion	71.05	72.97
TraesCS3A01G127900.1	Wheat	mitochondrion	71.05	71.43
TraesCS3B01G147100.1	Wheat	mitochondrion	70.0	60.45
KRH09770	Soybean	cytosol	16.32	58.49
GSMUA_Achr10P...	Banana	mitochondrion	51.58	51.04
HORVU3Hr1G023970.2	Barley	cytosol	68.95	50.58
KRH23549	Soybean	mitochondrion	42.63	50.0
AT3G15660.1	Thale cress	mitochondrion	43.68	49.11
CDY30094	Canola	mitochondrion	42.63	49.09
KRH44417	Soybean	cytosol, plastid	41.05	48.45
PGSC0003DMT400073383	Potato	mitochondrion	43.16	48.24
KRH47491	Soybean	cytosol, plastid	40.53	47.83
VIT_09s0002g06040.t01	Wine grape	mitochondrion	42.63	47.65
Solyc06g067960.2.1	Tomato	plastid	42.63	47.65
Bra027220.1-P	Field mustard	mitochondrion	42.63	47.37
CDX97692	Canola	mitochondrion	42.63	47.37
Bra021125.1-P	Field mustard	mitochondrion	41.05	46.71
CDY20141	Canola	mitochondrion	41.05	46.71
CDY21857	Canola	mitochondrion	41.05	46.71
GSMUA_Achr7P08380_001	Banana	plastid	55.26	38.6
EES16486	Sorghum	cytosol	25.26	32.65
EER93091	Sorghum	plastid	20.0	22.09
EES09081	Sorghum	plastid	30.53	20.21
KXG38234	Sorghum	cytosol	31.05	11.82

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	EntrezGene:8058682	UniProt:C5YAA6	EnsemblPlants:EES12336	ProteinID:EES12336
ProteinID:EES12336.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:GRX_PICOT-like	InterPro:Glutaredoxin	InterPro:IPR002109
InterPro:Monothiol_GRX-rel	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10293	PANTHER:PTHR10293:SF54	EnsemblPlantsGene:SORBI_3006G114400
SUPFAM:SSF52833	unigene:Sbi.10201	TIGRFAMs:TIGR00365	InterPro:Thioredoxin-like_sf	UniParc:UPI0001A870A1	RefSeq:XP_002448008.1

Description

hypothetical protein

Coordinates

chr6:-:48218898..48222486

Molecular Weight (calculated)

20653.6 Da

IEP (calculated)

7.576

GRAVY (calculated)

-0.347

Length

190 amino acids

Sequence
(BLAST)

001: MKRLVSTALA TRGLLRSRGA PSTTAVMSRP AFQQFMNYSS PQGGDPNAST NSTAARIAAD PDTHQDFEPK SRSSDMSLND IVAQDIKENP VLIYMKGFPE
101: SPMCGFSALA VKVLQQYGVP ICGRDILGDL KLKESVKAHT NWPTFPQIFI KGEFVGGSDI ILSMHQKGEL KDLLGDIAQR AEQKADAHDS

Best Arabidopsis Sequence Match ( AT3G15660.2 )
(BLAST)

001: MAASLSSRLI KGIANLKAVR SSRLTSASVY QNGMMRFSST VPSDSDTHDD FKPTQKVPPD STDSLKDIVE NDVKDNPVMI YMKGVPESPQ CGFSSLAVRV
101: LQQYNVPISS RNILEDQELK NAVKSFSHWP TFPQIFIKGE FIGGSDIILN MHKEGELEQK LKDVSGNQD

Arabidopsis Description

GRXS15GRX4 [Source:UniProtKB/TrEMBL;Acc:A0A178VHP8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.