CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69652
CDX69884
CDX85659
CDX91135
CDX95198
CDX95199
CDY09781
CDY21608
CDY42355
CDY54298
CDY66331

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15660.1	CDY54298	AT4G15730.1	21798944
AT3G15660.1	CDY66331	AT4G15730.1	21798944
AT3G15660.1	CDX69884	AT5G09830.1	21798944
AT3G15660.1	CDY21608	AT5G09830.1	21798944
AT3G15660.1	CDX69652	AT5G13280.1	21798944
AT3G15660.1	CDX85659	AT5G13280.1	21798944
AT3G15660.1	CDX91135	AT5G13280.1	21798944
AT3G15660.1	CDY09781	AT5G13280.1	21798944
AT3G15660.1	CDX95198	AT5G42220.1	21798944
AT3G15660.1	CDX95199	AT5G42220.1	21798944
AT3G15660.1	CDY42355	AT5G42220.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021125.1-P	Field mustard	mitochondrion	98.2	98.2
CDY20141	Canola	mitochondrion	97.01	97.01
CDX97692	Canola	mitochondrion	88.62	86.55
CDY30094	Canola	mitochondrion	82.63	83.64
AT3G15660.1	Thale cress	mitochondrion	82.63	81.66
VIT_09s0002g06040.t01	Wine grape	mitochondrion	70.06	68.82
PGSC0003DMT400073383	Potato	mitochondrion	65.87	64.71
Solyc06g067960.2.1	Tomato	plastid	65.87	64.71
KRH47491	Soybean	cytosol, plastid	62.28	64.6
KRH44417	Soybean	cytosol, plastid	61.08	63.35
KRH23549	Soybean	mitochondrion	61.08	62.96
Zm00001d008736_P001	Maize	mitochondrion	49.7	49.7
KXG31737	Sorghum	mitochondrion	53.29	48.11
TraesCS3D01G128900.1	Wheat	mitochondrion	51.5	46.49
TraesCS3A01G127900.1	Wheat	mitochondrion	52.1	46.03
Os01t0530400-01	Rice	mitochondrion	50.9	45.95
Os01t0174900-01	Rice	mitochondrion	50.9	45.95
CDX73434	Canola	cytosol	20.96	44.87
GSMUA_Achr10P...	Banana	mitochondrion	47.31	41.15
EES12336	Sorghum	mitochondrion	46.71	41.05
TraesCS3B01G147100.1	Wheat	mitochondrion	51.5	39.09
Zm00001d025657_P001	Maize	mitochondrion	43.71	37.82
HORVU3Hr1G023970.2	Barley	cytosol	52.1	33.59
GSMUA_Achr7P08380_001	Banana	plastid	53.29	32.72
CDX78278	Canola	plastid	28.74	27.75
CDY07516	Canola	plastid	29.94	27.62
CDX67614	Canola	plastid	29.34	27.07
CDY14473	Canola	plastid	31.14	18.06
CDY07744	Canola	plastid	31.14	17.81
CDY16635	Canola	cytosol	31.74	17.26
CDY67888	Canola	cytosol	32.34	15.34
CDX90882	Canola	cytosol	33.53	11.74
CDY21322	Canola	cytosol	32.93	10.83

Protein Annotations

Gene3D:3.40.30.10	MapMan:35.1	GO:A0A078GA10	UniProt:A0A078GA10	EnsemblPlants:CDY21857	ProteinID:CDY21857
ProteinID:CDY21857.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0015035	GO:GO:0019725
GO:GO:0022900	GO:GO:0045454	GO:GO:0055114	InterPro:GRX_PICOT-like	EnsemblPlantsGene:GSBRNA2T00018160001	InterPro:Glutaredoxin
InterPro:IPR002109	InterPro:Monothiol_GRX-rel	PFAM:PF00462	PFscan:PS51354	PANTHER:PTHR10293	PANTHER:PTHR10293:SF54
SUPFAM:SSF52833	TIGRFAMs:TIGR00365	InterPro:Thioredoxin-like_sf	UniParc:UPI0001D84187	:	:

Description

BnaC01g35910DBnaC01g35910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GA10]

Coordinates

chrLK032125:-:340044..341435

Molecular Weight (calculated)

18458.9 Da

IEP (calculated)

6.945

GRAVY (calculated)

-0.446

Length

167 amino acids

Sequence
(BLAST)

001: MAAALSSRFL NTVRCSRLAS VSSVYQNGMR RYSSSVPSDS DTHDDFKPTQ KVPPGGSSDS LKDLVENDVK ENPVMLYMKG VPEAPQCGFS SLAVRVLQQY
101: NVPIGARNIL EDPELKNAVK SFSHWPTFPQ IFIKGEFIGG SDIILNMHKE GELEEKLKDV SANHKSQ

Best Arabidopsis Sequence Match ( AT3G15660.2 )
(BLAST)

001: MAASLSSRLI KGIANLKAVR SSRLTSASVY QNGMMRFSST VPSDSDTHDD FKPTQKVPPD STDSLKDIVE NDVKDNPVMI YMKGVPESPQ CGFSSLAVRV
101: LQQYNVPISS RNILEDQELK NAVKSFSHWP TFPQIFIKGE FIGGSDIILN MHKEGELEQK LKDVSGNQD

Arabidopsis Description

GRXS15GRX4 [Source:UniProtKB/TrEMBL;Acc:A0A178VHP8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.