Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66331 | Canola | nucleus | 92.45 | 92.84 |
| AT4G15730.1 | Thale cress | nucleus | 52.87 | 46.93 |
| PGSC0003DMT400005774 | Potato | cytosol | 2.66 | 27.17 |
| PGSC0003DMT400005780 | Potato | nucleus | 8.94 | 26.58 |
| PGSC0003DMT400039034 | Potato | nucleus | 8.83 | 26.18 |
| PGSC0003DMT400039039 | Potato | nucleus | 8.72 | 25.55 |
| Solyc08g067570.1.1 | Tomato | nucleus | 8.51 | 24.69 |
| Os05t0371100-00 | Rice | cytosol | 3.83 | 24.66 |
| PGSC0003DMT400031270 | Potato | nucleus | 8.4 | 24.61 |
| Solyc12g017610.1.1 | Tomato | nucleus | 8.19 | 23.77 |
| Solyc08g067490.1.1 | Tomato | nucleus | 7.77 | 23.62 |
| Solyc08g067140.1.1 | Tomato | nucleus | 6.28 | 22.26 |
| PGSC0003DMT400065641 | Potato | nucleus | 4.26 | 21.51 |
| CDX76670 | Canola | nucleus | 26.28 | 19.22 |
| CDY11456 | Canola | nucleus | 25.96 | 18.81 |
| CDX89924 | Canola | nucleus | 19.15 | 18.79 |
| CDY25123 | Canola | nucleus | 25.96 | 18.47 |
| CDY18138 | Canola | nucleus | 18.3 | 18.07 |
| CDX67908 | Canola | nucleus | 25.11 | 18.03 |
| CDY37451 | Canola | nucleus | 19.57 | 17.74 |
| Solyc08g067590.1.1 | Tomato | nucleus | 2.23 | 17.5 |
| CDY32489 | Canola | nucleus | 19.79 | 17.3 |
| KRH50884 | Soybean | nucleus | 28.62 | 16.73 |
| GSMUA_Achr5P08000_001 | Banana | nucleus | 24.89 | 16.54 |
| Os03t0347300-01 | Rice | cytosol, nucleus | 16.06 | 16.29 |
| KXG39393 | Sorghum | mitochondrion | 23.19 | 16.28 |
| Os07t0669800-01 | Rice | nucleus | 17.98 | 16.13 |
| Zm00001d029134_P004 | Maize | mitochondrion | 23.3 | 16.04 |
| Solyc01g067600.2.1 | Tomato | nucleus | 27.98 | 15.94 |
| KRH02231 | Soybean | nucleus | 27.55 | 15.94 |
| KRH12132 | Soybean | nucleus | 28.62 | 15.91 |
| Zm00001d007121_P024 | Maize | nucleus | 26.91 | 15.89 |
| TraesCS2B01G135800.1 | Wheat | nucleus | 26.49 | 15.75 |
| TraesCS2A01G116600.1 | Wheat | nucleus | 26.49 | 15.75 |
| TraesCS2D01G118500.1 | Wheat | nucleus | 26.38 | 15.7 |
| OQU90452 | Sorghum | nucleus | 26.6 | 15.64 |
| Zm00001d022481_P019 | Maize | nucleus | 26.28 | 15.51 |
| PGSC0003DMT400005776 | Potato | nucleus | 4.26 | 15.5 |
| KRH37127 | Soybean | nucleus | 27.45 | 15.41 |
| TraesCS1B01G246700.4 | Wheat | nucleus | 23.62 | 15.21 |
| GSMUA_Achr8P21920_001 | Banana | nucleus | 25.53 | 15.14 |
| Zm00001d010490_P005 | Maize | nucleus | 22.87 | 15.12 |
| OQU77880 | Sorghum | nucleus | 22.77 | 15.02 |
| TraesCS1D01G235200.1 | Wheat | nucleus | 23.4 | 14.97 |
| HORVU1Hr1G058250.1 | Barley | nucleus | 23.3 | 14.91 |
| GSMUA_Achr3P08980_001 | Banana | nucleus | 26.06 | 14.9 |
| TraesCS1A01G237200.3 | Wheat | nucleus | 23.3 | 14.85 |
| VIT_05s0020g01570.t01 | Wine grape | cytosol, mitochondrion, plastid | 25.11 | 14.5 |
Protein Annotations
| EnsemblPlants:CDY54298 | EnsemblPlantsGene:GSBRNA2T00013784001 | Gene3D:3.30.40.100 | GO:A0A078IYT6 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0008270 | InterPro:IPR011124 | InterPro:Znf_CW | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF47 | PFAM:PF07496 |
| PFscan:PS51050 | ProteinID:CDY54298 | ProteinID:CDY54298.1 | SEG:seg | UniParc:UPI0004EB4762 | UniProt:A0A078IYT6 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC01g41970DBnaC01g41970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IYT6]
Coordinates
chrLK033300:-:41439..46207
Molecular Weight (calculated)
103381.0 Da
IEP (calculated)
9.016
GRAVY (calculated)
-0.610
Length
940 amino acids
Sequence
(BLAST)
(BLAST)
001: MGESYELEEG EFNCSAIYDL DVDLSYIDKK IENVLGDLQK KFELGSLDMF GPQVYKYGSF LPTYKRSPAV PPCQRSFMEN NNAQRFPNNL PVKNVVQKFQ
101: SLPATSCKPA SIQDSKTNQS SGSLLPHAPG KVTIKKEDAR IPGNDSSDHK PIRLRIKMGS KILSQKVTMV CKDLGLDDSP TRNSHDDSSR MLPHTSLEKT
201: SESPSRILQE MTAIPVPEDL LMSPLPENLL NLKDKEKRST LLGNEPVTKP GKVPFIQTQN KFSDVLGCGE TPSGRRKRKA VDCFNATTLN ETSSIGEVKK
301: QKVSSTGALA RESTTCGINS TSDGFTRKSN LQKGIKKDVE GDPRVSIAKS NRMKVVGKHA EKEKKIYPIK LKQNSSKSSF GDKVLSKMPS KDTENKVDFA
401: LAPASTSLDL DSWAECDTCK KWRLLPFSEN PDKLPDKWVC SMQTWLPGMN HCRISQEETT NAIISTHGAK VHGPETSNAD KSYHQSLTSG SLPNLIERKP
501: QGVSSKIMVD AAKPTKSTSQ VLKIKNIKLP LKTCNAAQIS TDQKAKGRSA GIQIKIKKEK DGDNQESESS KQIKTGDGNK LSRDLKAEEI HCKRDLDCTP
601: AERKTKRHDN DLYPSDVERV TKKRLLKPDH QPQPTTGSGS LCIKAHGIVS TPARKFGDLS CSSLKTFLEN RAGVTNVNGI THETMDRSSK SANDILQEAE
701: KLKKLADCFK NSGFDNEYKE VNFDAALKFL LGASIMEMSS TEKVEDGRMS HVEAYHTAAK LSESCAHQYE TKKEMSAAAL AYKCVEVACM RVVYCRSLGL
801: SGELNELQKM VQMTPQGESP SSSASDVDSF CRQGVIDKSA KTKRGLSHGV GTLLPVARNH QSFVPLLEVT ESMNLAMEAS AKSQQALGAV TVVTSEETLH
901: KDCVSAIKKV VDFSFHDVEA LIQMIEVARD VLSSSKVRGP
101: SLPATSCKPA SIQDSKTNQS SGSLLPHAPG KVTIKKEDAR IPGNDSSDHK PIRLRIKMGS KILSQKVTMV CKDLGLDDSP TRNSHDDSSR MLPHTSLEKT
201: SESPSRILQE MTAIPVPEDL LMSPLPENLL NLKDKEKRST LLGNEPVTKP GKVPFIQTQN KFSDVLGCGE TPSGRRKRKA VDCFNATTLN ETSSIGEVKK
301: QKVSSTGALA RESTTCGINS TSDGFTRKSN LQKGIKKDVE GDPRVSIAKS NRMKVVGKHA EKEKKIYPIK LKQNSSKSSF GDKVLSKMPS KDTENKVDFA
401: LAPASTSLDL DSWAECDTCK KWRLLPFSEN PDKLPDKWVC SMQTWLPGMN HCRISQEETT NAIISTHGAK VHGPETSNAD KSYHQSLTSG SLPNLIERKP
501: QGVSSKIMVD AAKPTKSTSQ VLKIKNIKLP LKTCNAAQIS TDQKAKGRSA GIQIKIKKEK DGDNQESESS KQIKTGDGNK LSRDLKAEEI HCKRDLDCTP
601: AERKTKRHDN DLYPSDVERV TKKRLLKPDH QPQPTTGSGS LCIKAHGIVS TPARKFGDLS CSSLKTFLEN RAGVTNVNGI THETMDRSSK SANDILQEAE
701: KLKKLADCFK NSGFDNEYKE VNFDAALKFL LGASIMEMSS TEKVEDGRMS HVEAYHTAAK LSESCAHQYE TKKEMSAAAL AYKCVEVACM RVVYCRSLGL
801: SGELNELQKM VQMTPQGESP SSSASDVDSF CRQGVIDKSA KTKRGLSHGV GTLLPVARNH QSFVPLLEVT ESMNLAMEAS AKSQQALGAV TVVTSEETLH
901: KDCVSAIKKV VDFSFHDVEA LIQMIEVARD VLSSSKVRGP
0001: MGEDYELEEG EMNCSSDEAV VDLDVDLSYI DKKVQNVLGH LQKGFGEEAR DRFGPEIFDY GSFLPTYKRL PAVPSCQRSS LGNHAVQRIS NSLPGKNVVQ
0101: KFQSPPATSC KLVRNQDPQN YQTSGSLLAQ APGKVPINKG NARTPANDLP HNKPIRVRIK MGSEILSQSV AMVCKDLGLD GSPNSPPRIS QDDSSRMLPH
0201: TSLGKTSESP SRILQEMTAI SVPEDLLMSP LPDSLLLVKD KKKQYTLLDN QPMIKTGKKS SIQIQNKFSD VLCCEKTPIG RRRKEVDCFH ATTWNETKKH
0301: KVLSTGQLAR DNSACGLGGA SLTTDGFTTK SNLQEGCRKD GESDPRVANK IKFVGLHAVK EKKTCPTKLQ QNRSKYRIGD KVLSKMPLKD AAYIGHNSMD
0401: TGFDFAVAPS STSVDLDYWA QCESCEKWRL LPYDLNTEKL PDKWLCSMQT WLPGMNHCGV SEEETTNAIK SFHASEGHGP DTGVKLLSDV RNADKIYQPL
0501: TSGSLPNPIE KKSNVEDLSQ GVSSNILVDA AKPMRSNPHI FKNKNMKLPG ETPTATQISA DLSHDFFQDK IDQKAKRRAA GAGCQIKVKK KKEADKEESD
0601: GSKHIKTGDG NKLARVIKAE EIHWNQDPKW TPAERKRKRH DNDFCTLNVE RDPKKRLLVS KKKPDHKPQL ITASGSLCTK AQGNINSTVR KIRLMGYKQG
0701: KDGKNSKLFA DGEENEPSME KAVTTKISVH ESKANQRNEL FQADCFQEHL NGDASCRYFS GGSGQISGIE TSNSSKVLGS HKSGRMYVEE VKASPVESVS
0801: SSPARSSCPT NDILQEAEKL RKLADCFKSS GFEYEYKEIN FKAALRFLLG ASVLEMCSTD NVEVGKMSHI EAYHTAAKLS ESCAHQYETS QEMAAATLAY
0901: KCTEVACMRL VYGRSLGLSG EWNELQKMVQ MTPQGESPSS SASDVDSFNH QGVIKKSAKT RRGLSHVAGN LLPVARSQLN FVPLLDFTGS MNLAMEASAK
1001: SQNAFKAVTD TSEERKHGDC ISAIKKVVDF SFHDVEALIK MIEVAMDALS SSRFGGPKC
0101: KFQSPPATSC KLVRNQDPQN YQTSGSLLAQ APGKVPINKG NARTPANDLP HNKPIRVRIK MGSEILSQSV AMVCKDLGLD GSPNSPPRIS QDDSSRMLPH
0201: TSLGKTSESP SRILQEMTAI SVPEDLLMSP LPDSLLLVKD KKKQYTLLDN QPMIKTGKKS SIQIQNKFSD VLCCEKTPIG RRRKEVDCFH ATTWNETKKH
0301: KVLSTGQLAR DNSACGLGGA SLTTDGFTTK SNLQEGCRKD GESDPRVANK IKFVGLHAVK EKKTCPTKLQ QNRSKYRIGD KVLSKMPLKD AAYIGHNSMD
0401: TGFDFAVAPS STSVDLDYWA QCESCEKWRL LPYDLNTEKL PDKWLCSMQT WLPGMNHCGV SEEETTNAIK SFHASEGHGP DTGVKLLSDV RNADKIYQPL
0501: TSGSLPNPIE KKSNVEDLSQ GVSSNILVDA AKPMRSNPHI FKNKNMKLPG ETPTATQISA DLSHDFFQDK IDQKAKRRAA GAGCQIKVKK KKEADKEESD
0601: GSKHIKTGDG NKLARVIKAE EIHWNQDPKW TPAERKRKRH DNDFCTLNVE RDPKKRLLVS KKKPDHKPQL ITASGSLCTK AQGNINSTVR KIRLMGYKQG
0701: KDGKNSKLFA DGEENEPSME KAVTTKISVH ESKANQRNEL FQADCFQEHL NGDASCRYFS GGSGQISGIE TSNSSKVLGS HKSGRMYVEE VKASPVESVS
0801: SSPARSSCPT NDILQEAEKL RKLADCFKSS GFEYEYKEIN FKAALRFLLG ASVLEMCSTD NVEVGKMSHI EAYHTAAKLS ESCAHQYETS QEMAAATLAY
0901: KCTEVACMRL VYGRSLGLSG EWNELQKMVQ MTPQGESPSS SASDVDSFNH QGVIKKSAKT RRGLSHVAGN LLPVARSQLN FVPLLDFTGS MNLAMEASAK
1001: SQNAFKAVTD TSEERKHGDC ISAIKKVVDF SFHDVEALIK MIEVAMDALS SSRFGGPKC
Arabidopsis Description
At4g15730 [Source:UniProtKB/TrEMBL;Acc:Q8GY51]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.