Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18138 | Canola | nucleus | 73.9 | 74.37 |
| CDY37451 | Canola | nucleus | 50.94 | 47.06 |
| CDY32489 | Canola | nucleus | 51.15 | 45.58 |
| VIT_14s0128g00910.t01 | Wine grape | cytosol | 4.38 | 44.68 |
| AT1G02990.4 | Thale cress | nucleus | 56.68 | 42.49 |
| Bra033364.1-P | Field mustard | nucleus | 52.09 | 32.44 |
| Os05t0371100-00 | Rice | cytosol | 4.91 | 32.19 |
| CDY11456 | Canola | nucleus | 29.96 | 22.13 |
| CDX76670 | Canola | nucleus | 29.02 | 21.63 |
| CDX67908 | Canola | nucleus | 28.39 | 20.78 |
| CDY25123 | Canola | nucleus | 28.5 | 20.67 |
| CDY54298 | Canola | nucleus | 18.79 | 19.15 |
| CDY66331 | Canola | nucleus | 18.37 | 18.8 |
| KXG39393 | Sorghum | mitochondrion | 26.1 | 18.67 |
| Zm00001d029134_P004 | Maize | mitochondrion | 25.47 | 17.88 |
| GSMUA_Achr5P08000_001 | Banana | nucleus | 25.78 | 17.46 |
| Os03t0347300-01 | Rice | cytosol, nucleus | 15.97 | 16.5 |
| OQU90452 | Sorghum | nucleus | 27.45 | 16.46 |
| Zm00001d022481_P019 | Maize | nucleus | 27.35 | 16.45 |
| TraesCS2D01G118500.1 | Wheat | nucleus | 26.62 | 16.14 |
| TraesCS2A01G116600.1 | Wheat | nucleus | 26.62 | 16.13 |
| TraesCS2B01G135800.1 | Wheat | nucleus | 26.51 | 16.07 |
| GSMUA_Achr8P21920_001 | Banana | nucleus | 26.51 | 16.03 |
| Zm00001d007121_P024 | Maize | nucleus | 26.2 | 15.77 |
| GSMUA_Achr3P08980_001 | Banana | nucleus | 26.51 | 15.45 |
| TraesCS1B01G246700.4 | Wheat | nucleus | 21.82 | 14.32 |
| HORVU1Hr1G058250.1 | Barley | nucleus | 21.71 | 14.16 |
| OQU77880 | Sorghum | nucleus | 20.98 | 14.11 |
| TraesCS1D01G235200.1 | Wheat | nucleus | 21.61 | 14.08 |
| Zm00001d010490_P005 | Maize | nucleus | 20.77 | 13.99 |
| TraesCS1A01G237200.3 | Wheat | nucleus | 21.4 | 13.9 |
| Os07t0669800-01 | Rice | nucleus | 13.78 | 12.6 |
Protein Annotations
| EnsemblPlants:CDX89924 | EnsemblPlantsGene:GSBRNA2T00150408001 | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF14 | ProteinID:CDX89924 | ProteinID:CDX89924.1 |
| SEG:seg | UniParc:UPI0004EEEEEC | MapMan:35.2 | : | : | : |
Description
BnaA10g01580D
Coordinates
chrLK031861:+:797790..802151
Molecular Weight (calculated)
103523.0 Da
IEP (calculated)
7.171
GRAVY (calculated)
-0.779
Length
958 amino acids
Sequence
(BLAST)
(BLAST)
001: MISVSNSSAR NEIGIGFGGI EEEMMMEDSD FEEDSIHSYV SCVDPDVALS YIDEKLENVL GHFQKDFEGG VSAENLGAKY GGYGSFLSMY QRSPVCKSPP
101: PQGQHQVVSG SKCSASSAVP QVSVSGSTSK APPASDVLVK SSNIGTSDSK PKSATKPSSS GPLNHKTFRL RIKVGSSDLS SPKNVSTYNS KQGFNTPPST
201: SEGEEGLLNG IHDSPTKILM AIVSFPLHKD QLLSPLSDDL IQLGKKEKII TDSGYVSVNK SDSKPELEKV SKSETRNEDQ ILKSELPEAH KSQKGSSRNS
301: LRGKDTAVNI SNTAVVDKYQ EDIGGSEDVC EGLVGDSGES KEQEQSSLVI EAKKEKLSEE NALKESLDSV QSDEEACKHL PLGVGSEREL SGTCKKPKTG
401: KSRFSSVDQP GSNKTLDGVN KTMITQASAH KLKDIAKASS HDGHEDRKRK QEENKASGDC MRLREAAAME SAVEKVRKKK RLKGSSCDKD RGSSQENGRD
501: SASHLPIRAS SEIIKTNVHE VKGSLVDTPA PSALDPLEPK PGRNSEGDEH HDIDFSAGDA LKRCRDGQGY STMDNPGTTK EGAQSSKDTA VEVKTKESRS
601: KKIPTRKVSR ESNKEGSKEY QDPDTKLDTN GSHFHSPQNS DKAKTIRGKS NHLEVTAEKV KNKPSPPVEV LGHGTEISNT KEQMMRNDNH SSLNQKQNGS
701: THKDDDVGSS PLKKESTCQT ASNSIKEATD LKHMADRLKN VVSNQESTSV YFQAALKFLH GASLLESSGS IARSNDIYGS TSKLCEFCAH EYEKNKDMGA
801: AALAYKCMEV AYLRITYSSH GNINRYRSEL QAALQEIPSG GSPSFASDGE NPNQTLAAEK AALSNTVRSS PRVTGNHVLS SGNNFSLSQL LSFSQNVSYA
901: MDASRKAQTA FAIAKGISSG TRYSSNGIAS IKRALDFDFQ DMEKLLRVVR LAMESINM
101: PQGQHQVVSG SKCSASSAVP QVSVSGSTSK APPASDVLVK SSNIGTSDSK PKSATKPSSS GPLNHKTFRL RIKVGSSDLS SPKNVSTYNS KQGFNTPPST
201: SEGEEGLLNG IHDSPTKILM AIVSFPLHKD QLLSPLSDDL IQLGKKEKII TDSGYVSVNK SDSKPELEKV SKSETRNEDQ ILKSELPEAH KSQKGSSRNS
301: LRGKDTAVNI SNTAVVDKYQ EDIGGSEDVC EGLVGDSGES KEQEQSSLVI EAKKEKLSEE NALKESLDSV QSDEEACKHL PLGVGSEREL SGTCKKPKTG
401: KSRFSSVDQP GSNKTLDGVN KTMITQASAH KLKDIAKASS HDGHEDRKRK QEENKASGDC MRLREAAAME SAVEKVRKKK RLKGSSCDKD RGSSQENGRD
501: SASHLPIRAS SEIIKTNVHE VKGSLVDTPA PSALDPLEPK PGRNSEGDEH HDIDFSAGDA LKRCRDGQGY STMDNPGTTK EGAQSSKDTA VEVKTKESRS
601: KKIPTRKVSR ESNKEGSKEY QDPDTKLDTN GSHFHSPQNS DKAKTIRGKS NHLEVTAEKV KNKPSPPVEV LGHGTEISNT KEQMMRNDNH SSLNQKQNGS
701: THKDDDVGSS PLKKESTCQT ASNSIKEATD LKHMADRLKN VVSNQESTSV YFQAALKFLH GASLLESSGS IARSNDIYGS TSKLCEFCAH EYEKNKDMGA
801: AALAYKCMEV AYLRITYSSH GNINRYRSEL QAALQEIPSG GSPSFASDGE NPNQTLAAEK AALSNTVRSS PRVTGNHVLS SGNNFSLSQL LSFSQNVSYA
901: MDASRKAQTA FAIAKGISSG TRYSSNGIAS IKRALDFDFQ DMEKLLRVVR LAMESINM
0001: MFLALTQMLL SLTLMRNSKT SWDIFRKILK VEFLLKIWFG GYGSFLSMYQ RSPVCSRPKT SPEVQQNQLG GRSNCSASSL VPQLSISGSA SKPPASDVLV
0101: KLNKFVKSSH IGTPDSKHMS DAKTSSSAPS NHKTLRFRIK VGSSDLSSLK NVSTFTKEGL NMLPSASRVN CLSEVEQDLL NGICDSPTKI LMAMVSFPLH
0201: KDQLLSPLSD DLIQLGSKEK ILKDAGYGST NKTDAKSTPD GLVVSDSQKR AGKFPIGKKE KLRDRVKYRP PSNKLDRNHT VSNTEKEADK ESCEELVSKT
0301: MKLPLLSCLS PSYIHPAKEI DNVSDSNVES ILRGTNKDAA LMGSKPELED NVVAFSDRSV KETESINVRK DVYLIKGEPL NSLESNPKRE KAPSIEHVDY
0401: SSVVKGTQSE TRNEEQILKS KLPKVQRSQK GSSSIVTMNS QRGKDAAVNI IKKNVPDKLQ EDIEESEHMC KGFFGDSKES KEEKQISPVL KAEKEKLSEE
0501: NALGESFNSV KNDEEACDHL NLVCEPDLKH LIKPSDLNED RHTTKQSVRR EVKNKHSLEG GMENMGMESE RELSGVSKKP KTGKSRFSAV DQPGSNKSNQ
0601: ILEVLDTNKT MITQALAENV KDFAKASSHG ERDDRKRKLK ENEESGDCMR LREAAVMESS GENVRKRKRL KGSSCDEKEL PFSSESCDKE RSVSQENGRD
0701: SASHLPSTLS SPSLCKDLGS EIIKNNVRES KGSLVESVAP LALRVLDSGE LKSGRISERD EYHDTDYNAG ETLKRCRDGE AYSTIDRPGT TKKAAEDSKD
0801: RERAYGEDCS IENLKPKKSG RYPGENCIEG DSKQKSREEE SSAPSKDNNW GLVNNVQDLG TAVKVKTKES RSKKRPARKV SMECNKEDSR EYQDPNTKLD
0901: RSGSHFSSRQ KPDTANTSRG KSNPLEVTTE QLKNKSASPA QVEVLGHDTE ISNTKKQRLR NDNHSVTHDE GSRNQKQNGS RHKDHVGLSP FKKESTSQTA
1001: SNSIKEATDL KHMADRLKNA VSNHESTGVY FQAALKFLHG ASLLESSGTT IARSKDIYGS TAKLCEFCAH EYEKNKDMGA AALAYKCMEV AYLRITYTSH
1101: GNIRRCRYEL QAALQVIPSG ESPSFASDGE NSNHTLTAEK FALSNTVRSS PSVTGNHVIS SGNNSSLSQL LAFSKNVNYA MEASRKAQIA LAAAKGKSFE
1201: TRYSSNGITC IKRALDFNFQ DMEKLLHVVR LAMESINR
0101: KLNKFVKSSH IGTPDSKHMS DAKTSSSAPS NHKTLRFRIK VGSSDLSSLK NVSTFTKEGL NMLPSASRVN CLSEVEQDLL NGICDSPTKI LMAMVSFPLH
0201: KDQLLSPLSD DLIQLGSKEK ILKDAGYGST NKTDAKSTPD GLVVSDSQKR AGKFPIGKKE KLRDRVKYRP PSNKLDRNHT VSNTEKEADK ESCEELVSKT
0301: MKLPLLSCLS PSYIHPAKEI DNVSDSNVES ILRGTNKDAA LMGSKPELED NVVAFSDRSV KETESINVRK DVYLIKGEPL NSLESNPKRE KAPSIEHVDY
0401: SSVVKGTQSE TRNEEQILKS KLPKVQRSQK GSSSIVTMNS QRGKDAAVNI IKKNVPDKLQ EDIEESEHMC KGFFGDSKES KEEKQISPVL KAEKEKLSEE
0501: NALGESFNSV KNDEEACDHL NLVCEPDLKH LIKPSDLNED RHTTKQSVRR EVKNKHSLEG GMENMGMESE RELSGVSKKP KTGKSRFSAV DQPGSNKSNQ
0601: ILEVLDTNKT MITQALAENV KDFAKASSHG ERDDRKRKLK ENEESGDCMR LREAAVMESS GENVRKRKRL KGSSCDEKEL PFSSESCDKE RSVSQENGRD
0701: SASHLPSTLS SPSLCKDLGS EIIKNNVRES KGSLVESVAP LALRVLDSGE LKSGRISERD EYHDTDYNAG ETLKRCRDGE AYSTIDRPGT TKKAAEDSKD
0801: RERAYGEDCS IENLKPKKSG RYPGENCIEG DSKQKSREEE SSAPSKDNNW GLVNNVQDLG TAVKVKTKES RSKKRPARKV SMECNKEDSR EYQDPNTKLD
0901: RSGSHFSSRQ KPDTANTSRG KSNPLEVTTE QLKNKSASPA QVEVLGHDTE ISNTKKQRLR NDNHSVTHDE GSRNQKQNGS RHKDHVGLSP FKKESTSQTA
1001: SNSIKEATDL KHMADRLKNA VSNHESTGVY FQAALKFLHG ASLLESSGTT IARSKDIYGS TAKLCEFCAH EYEKNKDMGA AALAYKCMEV AYLRITYTSH
1101: GNIRRCRYEL QAALQVIPSG ESPSFASDGE NSNHTLTAEK FALSNTVRSS PSVTGNHVIS SGNNSSLSQL LAFSKNVNYA MEASRKAQIA LAAAKGKSFE
1201: TRYSSNGITC IKRALDFNFQ DMEKLLHVVR LAMESINR
Arabidopsis Description
BEST Arabidopsis thaliana protein match is: CW-type Zinc Finger (TAIR:AT3G62900.1); Has 5847 Blast hits to 4410 proteins in 438 species: Archae - 17; Bacteria - 452; Metazoa - 2463; Fungi - 354; Plants - 306; Viruses - 11; Other Eukaryotes - 2244 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G02990]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.