Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G118500.1 | Wheat | nucleus | 98.36 | 98.42 |
| TraesCS2B01G135800.1 | Wheat | nucleus | 98.23 | 98.23 |
| OQU90452 | Sorghum | nucleus | 64.58 | 63.89 |
| Zm00001d022481_P019 | Maize | nucleus | 63.63 | 63.15 |
| Os07t0669800-01 | Rice | nucleus | 40.1 | 60.5 |
| Zm00001d007121_P024 | Maize | nucleus | 60.09 | 59.67 |
| VIT_14s0128g00910.t01 | Wine grape | cytosol | 3.23 | 54.26 |
| PGSC0003DMT400029537 | Potato | mitochondrion | 1.77 | 49.12 |
| PGSC0003DMT400013673 | Potato | cytosol, plastid, vacuole | 4.62 | 45.62 |
| PGSC0003DMT400005774 | Potato | cytosol | 2.28 | 39.13 |
| PGSC0003DMT400039034 | Potato | nucleus | 6.58 | 32.81 |
| GSMUA_Achr5P08000_001 | Banana | nucleus | 29.1 | 32.51 |
| PGSC0003DMT400039039 | Potato | nucleus | 6.51 | 32.09 |
| PGSC0003DMT400005780 | Potato | nucleus | 6.39 | 31.96 |
| Solyc12g017610.1.1 | Tomato | nucleus | 6.51 | 31.79 |
| PGSC0003DMT400031270 | Potato | nucleus | 6.45 | 31.78 |
| Solyc08g067570.1.1 | Tomato | nucleus | 6.33 | 30.86 |
| GSMUA_Achr8P21920_001 | Banana | nucleus | 30.55 | 30.47 |
| GSMUA_Achr3P08980_001 | Banana | nucleus | 31.25 | 30.05 |
| TraesCS1A01G237200.3 | Wheat | nucleus | 27.45 | 29.42 |
| VIT_07s0104g01600.t01 | Wine grape | nucleus | 29.29 | 28.58 |
| Solyc08g067490.1.1 | Tomato | nucleus | 5.44 | 27.83 |
| Bra007709.1-P | Field mustard | nucleus | 22.52 | 27.45 |
| CDY11456 | Canola | nucleus | 22.45 | 27.37 |
| CDX76670 | Canola | nucleus | 22.07 | 27.16 |
| CDY66331 | Canola | nucleus | 16.07 | 27.14 |
| Bra033505.1-P | Field mustard | nucleus | 15.94 | 26.92 |
| CDY37451 | Canola | nucleus | 17.65 | 26.9 |
| CDX89924 | Canola | nucleus | 16.13 | 26.62 |
| CDY54298 | Canola | nucleus | 15.75 | 26.49 |
| Solyc08g067140.1.1 | Tomato | nucleus | 4.43 | 26.42 |
| PGSC0003DMT400005776 | Potato | nucleus | 4.3 | 26.36 |
| AT3G62900.2 | Thale cress | nucleus | 23.21 | 26.16 |
| KRG96403 | Soybean | nucleus | 27.77 | 26.12 |
| Bra003514.1-P | Field mustard | nucleus | 21.7 | 25.97 |
| CDX67908 | Canola | nucleus | 21.44 | 25.9 |
| Solyc08g067590.1.1 | Tomato | nucleus | 1.96 | 25.83 |
| PGSC0003DMT400065641 | Potato | nucleus | 3.04 | 25.81 |
| KRH68140 | Soybean | nucleus | 27.26 | 25.79 |
| CDY18138 | Canola | nucleus | 15.5 | 25.74 |
| Solyc09g074670.2.1 | Tomato | nucleus | 26.76 | 25.51 |
| CDY25123 | Canola | nucleus | 21.32 | 25.51 |
| AT4G15730.1 | Thale cress | nucleus | 17.01 | 25.4 |
| CDY32489 | Canola | nucleus | 17.08 | 25.12 |
| Solyc06g008720.2.1 | Tomato | nucleus | 19.67 | 24.45 |
| VIT_14s0128g00900.t01 | Wine grape | nucleus | 20.24 | 24.43 |
| Solyc01g067600.2.1 | Tomato | nucleus | 24.67 | 23.64 |
| KRH37127 | Soybean | nucleus | 24.98 | 23.6 |
| Bra032575.1-P | Field mustard | nucleus | 10.31 | 23.25 |
| KRH12132 | Soybean | nucleus | 24.86 | 23.24 |
| VIT_05s0020g01570.t01 | Wine grape | cytosol, mitochondrion, plastid | 23.59 | 22.91 |
| KRH50884 | Soybean | nucleus | 23.02 | 22.64 |
| KRH02231 | Soybean | nucleus | 23.15 | 22.52 |
| AT1G02990.4 | Thale cress | nucleus | 17.84 | 22.07 |
| Bra033364.1-P | Field mustard | nucleus | 15.69 | 16.12 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G116600.1 | EnsemblPlantsGene:TraesCS2A01G116600 | Gene3D:3.30.40.100 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 |
| InterPro:IPR011124 | InterPro:Znf_CW | ncoils:Coil | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF14 | PFAM:PF07496 |
| PFscan:PS51050 | SEG:seg | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr2A:-:66579293..66589411
Molecular Weight (calculated)
172040.0 Da
IEP (calculated)
8.849
GRAVY (calculated)
-0.872
Length
1581 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLSVRRRQED AGGAAGMADH AELEEGEAYA DDMPPFDDPD VSLAYIDEKL QNVLGHFQKD FEGGVSAENL GSKFGGYGSF LPTYQRSPLL PHTRTPPKVA
0101: NASSRSPYHQ STEDVCQNPP AMAVPSVSQN NGSVAPFSGD SIKKERCEST ASKRGSSTHD PSNGPSKSSD QNRFKVRIKV GSDNVLARNN AAIYSGLGLD
0201: ISSPSSVEES PDGHGGLSPE FSNVQLESPR TILQIMTCFS VPGGYLLSPL HGSLLQLTKK VVPSLKKWET SLEIENAQEA YGGHVVKKMK SDGKKKKPTD
0301: MKRSSNRNDV SAFMKNEIDV ETLAGQKIAS EALSIPSSPR GMDANSNCQF EEEATGKSLE RNKDDRLKEW AVNSNSKTIT AETAKEETTD CLASGGFGSS
0401: ELELSAAKRE LKPVTEKTAL TLEEMNTTSD TDFLLDRKHE RKIKPESKIN PSVINFEENA VIDEKAPAVC RSMEKVTSKE ASLYDTNVKS NTKSEAKRIH
0501: REQKKNAPTS SDLLDVDKGA RSSAGVKERK NDSHSKSSHS GKKPKAKPHR DVRDSLPDGS HGSKEQDILE NGVGLGELQP KEKYWIKRDS DMLGASKREI
0601: SSSAKHDRHI ASEEQKMHVP PSSVSTANAA PALQAPVVIE EHWVQCDICQ KWRLLPYESD PDTLPKEWKC SMQLWLPGMN RCDVGEEETT NALNALYVIP
0701: PPANGIPSVG HPHAASSGLA TANTFSINGH AEQSRKRKSF PGDGSALVDS SHPTQASAYS TITQPPPRVR STADTNHYPS ERDSVSKSVD VSTEKKKSKS
0801: KNRGSYSDGG DLVERSKKHS KGKGKREMDY GEYKASKKIK KEERHRSSRD RNPECDLASG DVPDEAKAFL AKAKSLGEKG DISSLKQKSV ARSDRLEKSK
0901: RDKDEDIALP EDRDKEQYQT SDVQRSDVSS KKRIVKEWEE SQHSSIAQVS RGTTVNHSSA AKETHKDQNL KETKSKPIKS EELYSTTDSK LGKGLHSNQI
1001: SSYYGGHVNN ELVEDSTHFA GKRGPSEVLD KRSSEHALDL AGAASSDVPT TAIASSSSKA SGSQKKKNNS QVAKTSPIES VSSSPPRNSN IDKFSQNRIV
1101: EKDGPMNANP GTMPSSVKYL NTEVDIVDNV RQAKKSKESL LASEPVLHGS SQGNSDKDDE LVQLTQGHAS ERFSLRKGLD DDQQHASGRK DSTVNGSSTA
1201: RGYNHLHSGD KNNLRTDGSL VQPRTAASGL KGDLIASESK KTAAPIQDRN GLTHCALDGN PKPEVPSGKD KSYPKSNKQD MEKPKAQIAP SPLKETHSTP
1301: VKSNASKLTP QSRRSSDENG GQQRVAKQGT SNPTEGKDSN STAYALKEAR DLKHKANRLK KEGKELESTR LYFEAALKFL HVASLLEPPG IDGLKQGDAA
1401: QSMYSDTAKL CNFVGHEYER CKKMAAAALA YKCVEVAYLK AAYYKYPIAS KDRQVLQAVV QTTPGESPSS SASDIDNLNN NGLSKMAPSN KDANSPQVAG
1501: NHLLLAVRNQ PHLTRLLAYT NDVNSAFEAT RKSQMAIASA AGNHEKGVDG LSSVKTVLDF NFRSVNDLLR LVRISMESIS C
0101: NASSRSPYHQ STEDVCQNPP AMAVPSVSQN NGSVAPFSGD SIKKERCEST ASKRGSSTHD PSNGPSKSSD QNRFKVRIKV GSDNVLARNN AAIYSGLGLD
0201: ISSPSSVEES PDGHGGLSPE FSNVQLESPR TILQIMTCFS VPGGYLLSPL HGSLLQLTKK VVPSLKKWET SLEIENAQEA YGGHVVKKMK SDGKKKKPTD
0301: MKRSSNRNDV SAFMKNEIDV ETLAGQKIAS EALSIPSSPR GMDANSNCQF EEEATGKSLE RNKDDRLKEW AVNSNSKTIT AETAKEETTD CLASGGFGSS
0401: ELELSAAKRE LKPVTEKTAL TLEEMNTTSD TDFLLDRKHE RKIKPESKIN PSVINFEENA VIDEKAPAVC RSMEKVTSKE ASLYDTNVKS NTKSEAKRIH
0501: REQKKNAPTS SDLLDVDKGA RSSAGVKERK NDSHSKSSHS GKKPKAKPHR DVRDSLPDGS HGSKEQDILE NGVGLGELQP KEKYWIKRDS DMLGASKREI
0601: SSSAKHDRHI ASEEQKMHVP PSSVSTANAA PALQAPVVIE EHWVQCDICQ KWRLLPYESD PDTLPKEWKC SMQLWLPGMN RCDVGEEETT NALNALYVIP
0701: PPANGIPSVG HPHAASSGLA TANTFSINGH AEQSRKRKSF PGDGSALVDS SHPTQASAYS TITQPPPRVR STADTNHYPS ERDSVSKSVD VSTEKKKSKS
0801: KNRGSYSDGG DLVERSKKHS KGKGKREMDY GEYKASKKIK KEERHRSSRD RNPECDLASG DVPDEAKAFL AKAKSLGEKG DISSLKQKSV ARSDRLEKSK
0901: RDKDEDIALP EDRDKEQYQT SDVQRSDVSS KKRIVKEWEE SQHSSIAQVS RGTTVNHSSA AKETHKDQNL KETKSKPIKS EELYSTTDSK LGKGLHSNQI
1001: SSYYGGHVNN ELVEDSTHFA GKRGPSEVLD KRSSEHALDL AGAASSDVPT TAIASSSSKA SGSQKKKNNS QVAKTSPIES VSSSPPRNSN IDKFSQNRIV
1101: EKDGPMNANP GTMPSSVKYL NTEVDIVDNV RQAKKSKESL LASEPVLHGS SQGNSDKDDE LVQLTQGHAS ERFSLRKGLD DDQQHASGRK DSTVNGSSTA
1201: RGYNHLHSGD KNNLRTDGSL VQPRTAASGL KGDLIASESK KTAAPIQDRN GLTHCALDGN PKPEVPSGKD KSYPKSNKQD MEKPKAQIAP SPLKETHSTP
1301: VKSNASKLTP QSRRSSDENG GQQRVAKQGT SNPTEGKDSN STAYALKEAR DLKHKANRLK KEGKELESTR LYFEAALKFL HVASLLEPPG IDGLKQGDAA
1401: QSMYSDTAKL CNFVGHEYER CKKMAAAALA YKCVEVAYLK AAYYKYPIAS KDRQVLQAVV QTTPGESPSS SASDIDNLNN NGLSKMAPSN KDANSPQVAG
1501: NHLLLAVRNQ PHLTRLLAYT NDVNSAFEAT RKSQMAIASA AGNHEKGVDG LSSVKTVLDF NFRSVNDLLR LVRISMESIS C
0001: MILVSSSDAR SELGLGFGGL GEEIMQDCDF EEESTHSYVS CVDPDVALSY IDEKLENVLG HFQKDFEGGV SAENLGAKFG GYGSFLSMYQ RSPVCSRPKT
0101: SPEVQQNQLG GRSNCSASSL VPQLSISGSA SKPPASDVLV KLNKFVKSSH IGTPDSKHMS DAKTSSSAPS NHKTLRFRIK VGSSDLSSLK NVSTFTKEGL
0201: NMLPSASRVN CLSEVEQDLL NGICDSPTKI LMAMVSFPLH KDQLLSPLSD DLIQLGSKEK ILKDAGYGST NKTDAKSTPD GLVVSDSQKR AGKFPIGKKE
0301: KLRDRVKYRP PSNKLDRNHT VSNTEKEADK ESCEELVSKT MKLPLLSCLS PSYIHPAKEI DNVSDSNVES ILRGTNKDAA LMGSKPELED NVVAFSDRSV
0401: KETESINVRK DVYLIKGEPL NSLESNPKRE KAPSIEHVDY SSVVKGTQSE TRNEEQILKS KLPKVQRSQK GSSSIVTMNS QRGKDAAVNI IKKNVPDKLQ
0501: EDIEESEHMC KGFFGDSKES KEEKQISPVL KAEKEKLSEE NALGESFNSV KNDEEACDHL NLVCEPDLKH LIKPSDLNED RHTTKQSVRR EVKNKHSLEG
0601: GMENMGMESE RELSGVSKKP KTGKSRFSAV DQPGSNKSNQ ILEVLDTNKT MITQALAENV KDFAKASSHG ERDDRKRKLK ENEESGDCMR LREAAVMESS
0701: GENVRKRKRL KGSSCDEKEL PFSSESCDKE RSVSQENGRD SASHLPSTLS SPSLCKDLGS EIIKNNVRES KGSLVESVAP LALRVLDSGE LKSGRISERD
0801: EYHDTDYNAG ETLKRCRDGE AYSTIDRPGT TKKAAEDSKD RERAYGEDCS IENLKPKKSG RYPGENCIEG DSKQKSREEE SSAPSKDNNW GLVNNVQDLG
0901: TAVKVKTKES RSKKRPARKV SMECNKEDSR EYQDPNTKLD RSGSHFSSRQ KPDTANTSRG KSNPLEVTTE QLKNKSASPA QVEVLGHDTE ISNTKKQRLR
1001: NDNHSVTHDE GSRNQKQNGS RHKDHVGLSP FKKESTSQTA SNSIKEATDL KHMADRLKNA VSNHESTGVY FQAALKFLHG ASLLESSGTT IARSKDIYGS
1101: TAKLCEFCAH EYEKNKDMGA AALAYKCMEV AYLRITYTSH GNIRRCRYEL QAALQVIPSG ESPSFASDGE NSNHTLTAEK FALSNTVRSS PSVTGNHVIS
1201: SGNNSSLSQL LAFSKNVNYA MEASRKAQIA LAAAKGKSFE TRYSSNGITC IKRALDFNFQ DMEKLLHVVR LAMESINR
0101: SPEVQQNQLG GRSNCSASSL VPQLSISGSA SKPPASDVLV KLNKFVKSSH IGTPDSKHMS DAKTSSSAPS NHKTLRFRIK VGSSDLSSLK NVSTFTKEGL
0201: NMLPSASRVN CLSEVEQDLL NGICDSPTKI LMAMVSFPLH KDQLLSPLSD DLIQLGSKEK ILKDAGYGST NKTDAKSTPD GLVVSDSQKR AGKFPIGKKE
0301: KLRDRVKYRP PSNKLDRNHT VSNTEKEADK ESCEELVSKT MKLPLLSCLS PSYIHPAKEI DNVSDSNVES ILRGTNKDAA LMGSKPELED NVVAFSDRSV
0401: KETESINVRK DVYLIKGEPL NSLESNPKRE KAPSIEHVDY SSVVKGTQSE TRNEEQILKS KLPKVQRSQK GSSSIVTMNS QRGKDAAVNI IKKNVPDKLQ
0501: EDIEESEHMC KGFFGDSKES KEEKQISPVL KAEKEKLSEE NALGESFNSV KNDEEACDHL NLVCEPDLKH LIKPSDLNED RHTTKQSVRR EVKNKHSLEG
0601: GMENMGMESE RELSGVSKKP KTGKSRFSAV DQPGSNKSNQ ILEVLDTNKT MITQALAENV KDFAKASSHG ERDDRKRKLK ENEESGDCMR LREAAVMESS
0701: GENVRKRKRL KGSSCDEKEL PFSSESCDKE RSVSQENGRD SASHLPSTLS SPSLCKDLGS EIIKNNVRES KGSLVESVAP LALRVLDSGE LKSGRISERD
0801: EYHDTDYNAG ETLKRCRDGE AYSTIDRPGT TKKAAEDSKD RERAYGEDCS IENLKPKKSG RYPGENCIEG DSKQKSREEE SSAPSKDNNW GLVNNVQDLG
0901: TAVKVKTKES RSKKRPARKV SMECNKEDSR EYQDPNTKLD RSGSHFSSRQ KPDTANTSRG KSNPLEVTTE QLKNKSASPA QVEVLGHDTE ISNTKKQRLR
1001: NDNHSVTHDE GSRNQKQNGS RHKDHVGLSP FKKESTSQTA SNSIKEATDL KHMADRLKNA VSNHESTGVY FQAALKFLHG ASLLESSGTT IARSKDIYGS
1101: TAKLCEFCAH EYEKNKDMGA AALAYKCMEV AYLRITYTSH GNIRRCRYEL QAALQVIPSG ESPSFASDGE NSNHTLTAEK FALSNTVRSS PSVTGNHVIS
1201: SGNNSSLSQL LAFSKNVNYA MEASRKAQIA LAAAKGKSFE TRYSSNGITC IKRALDFNFQ DMEKLLHVVR LAMESINR
Arabidopsis Description
BEST Arabidopsis thaliana protein match is: CW-type Zinc Finger (TAIR:AT3G62900.1); Has 5847 Blast hits to 4410 proteins in 438 species: Archae - 17; Bacteria - 452; Metazoa - 2463; Fungi - 354; Plants - 306; Viruses - 11; Other Eukaryotes - 2244 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G02990]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.