Factsheet for TraesCS5D01G538600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G498700.1
TraesCS6A01G180500.1
TraesCS6A01G298800.1
TraesCS6B01G328200.1
TraesCS6D01G164600.1
TraesCS6D01G278500.1
TraesCS7A01G001900.1
TraesCS7A01G200700.1
TraesCS7B01G107500.1
TraesCS7D01G001600.2
TraesCS7D01G204000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01630.1	TraesCS6A01G298800.1	AT1G68060.1	21798944
AT1G01630.1	TraesCS6B01G328200.1	AT1G68060.1	21798944
AT1G01630.1	TraesCS6D01G278500.1	AT1G68060.1	21798944
AT1G01630.1	TraesCS7A01G200700.1	AT1G68060.1	21798944
AT1G01630.1	TraesCS7B01G107500.1	AT1G68060.1	21798944
AT1G01630.1	TraesCS7D01G204000.1	AT1G68060.1	21798944
AT1G01630.1	TraesCS4A01G498700.1	AT3G54850.1	21798944
AT1G01630.1	TraesCS7A01G001900.1	AT3G54850.1	21798944
AT1G01630.1	TraesCS7D01G001600.2	AT3G54850.1	21798944
AT1G01630.1	TraesCS6A01G180500.1	AT4G32190.1	21798944
AT1G01630.1	TraesCS6D01G164600.1	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G333500.1	Wheat	cytosol	93.8	96.6
TraesCS5B01G552300.1	Wheat	cytosol	95.87	95.87
HORVU5Hr1G121940.5	Barley	cytosol	93.39	90.76
TraesCS5D01G538500.1	Wheat	cytosol	80.58	79.59
TraesCS5D01G538300.1	Wheat	cytosol	73.14	69.41
EER90511	Sorghum	cytosol	68.59	66.4
Os03t0850700-01	Rice	cytosol	69.42	64.37
Zm00001d012847_P001	Maize	cytosol	67.36	59.06
TraesCS5D01G538700.1	Wheat	cytosol	76.86	58.86
TraesCS3D01G433800.1	Wheat	cytosol	51.65	52.08
TraesCS3D01G433700.1	Wheat	cytosol	52.48	51.0
GSMUA_Achr4P15920_001	Banana	cytosol	54.96	50.57
VIT_01s0150g00170.t01	Wine grape	cytosol	50.41	49.59
VIT_17s0000g00130.t01	Wine grape	cytosol	50.41	47.66
Bra032645.1-P	Field mustard	cytosol	45.45	47.62
KRH41051	Soybean	cytosol	47.52	46.37
Bra033247.1-P	Field mustard	cytosol	48.76	46.27
CDX90047	Canola	cytosol	48.76	46.27
AT1G01630.1	Thale cress	cytosol	48.35	45.88
CDY15164	Canola	cytosol	47.93	45.49
PGSC0003DMT400036745	Potato	cytosol	48.76	43.54
Solyc03g118150.2.1	Tomato	cytosol	48.76	43.54
KRH54081	Soybean	cytosol	47.11	43.02
CDY38020	Canola	cytosol	46.28	42.75
KRH63881	Soybean	cytosol	46.28	42.42
Solyc06g068800.2.1	Tomato	cytosol	47.52	37.22
PGSC0003DMT400065724	Potato	cytosol	47.52	37.22
KRH59732	Soybean	endoplasmic reticulum, golgi	43.8	37.06
TraesCS3D01G186000.2	Wheat	nucleus	30.17	24.09
TraesCS4D01G055300.1	Wheat	cytosol	27.27	22.6
TraesCS4D01G055200.1	Wheat	cytosol	27.27	22.6
TraesCS4D01G055400.1	Wheat	cytosol	26.86	22.26
TraesCS4D01G055100.1	Wheat	cytosol	19.01	22.01
TraesCS7D01G090800.1	Wheat	cytosol	22.31	19.08
TraesCS3D01G453300.2	Wheat	cytosol, mitochondrion, nucleus, plastid	21.9	19.0
TraesCS7D01G448500.3	Wheat	mitochondrion, plastid	22.73	17.74
TraesCS6D01G281700.1	Wheat	nucleus	26.45	16.29
TraesCS4D01G242900.1	Wheat	cytosol	23.97	12.92

Protein Annotations

EnsemblPlants:TraesCS5D01G538600.1	EnsemblPlantsGene:TraesCS5D01G538600	Gene3D:3.40.525.10	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom
InterPro:CRAL/TRIO_N_dom_sf	InterPro:IPR001251	InterPro:IPR036865	PANTHER:PTHR10174	PANTHER:PTHR10174:SF158	PFAM:PF00650
PFscan:PS50191	SEG:seg	SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938	SUPFAM:SSF52087
TIGR:cd00170	TMHMM:TMhelix	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr5D:-:550610906..550612540

Molecular Weight (calculated)

28017.5 Da

IEP (calculated)

8.413

GRAVY (calculated)

-0.557

Length

242 amino acids

Sequence
(BLAST)

001: MDCGTDERQY GHGGDGDAAE WKKVAELREF VEAQDPSAKG EDDFALRRFL RARDHNINKA SVMLLRYLAW KRVTKPHGFI SDDEVRGEIA KGRDRHQGFD
101: RLGRPMSYLY GGRHFPVRRD HEDLKRYVVY VFDKICTKLP TGQEKFAAVI DLKGWGYANC DIRGYLAGLD IMQSYYPERL GRVFLIHVPY LFMAAWKIVY
201: PLIDDKTKKK FVFVADRDLD ATLRDAIDES QLPEEYGGKL KL

Best Arabidopsis Sequence Match ( AT1G01630.1 )
(BLAST)

001: MENKETKQEP AAAAEQKTVP LIEDEIERSK VGIMRALCDR QDPETKEVDD LMIRRFLRAR DLDIEKASTM FLNYLTWKRS MLPKGHIPEA EIANDLSHNK
101: MCMQGHDKMG RPIAVAIGNR HNPSKGNPDE FKRFVVYTLE KICARMPRGQ EKFVAIGDLQ GWGYSNCDIR GYLAALSTLQ DCYPERLGKL YIVHAPYIFM
201: TAWKVIYPFI DANTKKKIVF VENKKLTPTL LEDIDESQLP DIYGGKLPLV PIQET

Arabidopsis Description

Polyphosphoinositide binding protein, putative [Source:UniProtKB/TrEMBL;Acc:Q9LQ96]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.