Factsheet for TraesCS4A01G498700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G120800.1
TraesCS1A01G339600.1
TraesCS1B01G140100.1
TraesCS1B01G351900.1
TraesCS1D01G121600.1
TraesCS1D01G341600.1
TraesCS3A01G274000.1
TraesCS3A01G313600.1
TraesCS3B01G158300.1
TraesCS3B01G307700.2
TraesCS3D01G140700.1
TraesCS3D01G273200.1
TraesCS4A01G498700.1
TraesCS5A01G389800.1
TraesCS5B01G394800.1
TraesCS5D01G399700.1
TraesCS6A01G251400.1
TraesCS6B01G273900.1
TraesCS6D01G233200.1
TraesCS7A01G001900.1
TraesCS7D01G001600.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54850.1	TraesCS5A01G389800.1	AT1G04130.1	21798944
AT3G54850.1	TraesCS5B01G394800.1	AT1G04130.1	21798944
AT3G54850.1	TraesCS5D01G399700.1	AT1G04130.1	21798944
AT3G54850.1	TraesCS6A01G251400.1	AT3G48150.1	21798944
AT3G54850.1	TraesCS6B01G273900.1	AT3G48150.1	21798944
AT3G54850.1	TraesCS6D01G233200.1	AT3G48150.1	21798944
AT3G54850.1	TraesCS4A01G498700.1	AT3G54850.1	21798944
AT3G54850.1	TraesCS7A01G001900.1	AT3G54850.1	21798944
AT3G54850.1	TraesCS7D01G001600.2	AT3G54850.1	21798944
AT3G54850.1	TraesCS1A01G120800.1	AT4G39470.1	21798944
AT3G54850.1	TraesCS1B01G140100.1	AT4G39470.1	21798944
AT3G54850.1	TraesCS1D01G121600.1	AT4G39470.1	21798944
AT3G54850.1	TraesCS1A01G339600.1	AT5G58950.1	21798944
AT3G54850.1	TraesCS1B01G351900.1	AT5G58950.1	21798944
AT3G54850.1	TraesCS1D01G341600.1	AT5G58950.1	21798944
AT3G54850.1	TraesCS3A01G274000.1	AT5G58950.1	21798944
AT3G54850.1	TraesCS3A01G313600.1	AT5G58950.1	21798944
AT3G54850.1	TraesCS3B01G158300.1	AT5G58950.1	21798944
AT3G54850.1	TraesCS3B01G307700.2	AT5G58950.1	21798944
AT3G54850.1	TraesCS3D01G140700.1	AT5G58950.1	21798944
AT3G54850.1	TraesCS3D01G273200.1	AT5G58950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G001900.1	Wheat	cytosol	82.78	98.87
TraesCS7D01G001600.2	Wheat	cytosol, plastid	91.94	96.68
HORVU7Hr1G000780.1	Barley	cytosol	87.52	93.9
Os06t0102700-01	Rice	plasma membrane	78.36	82.12
EER87680	Sorghum	cytosol	75.99	80.03
Zm00001d045632_P004	Maize	cytosol, mitochondrion	75.83	76.19
KRH04403	Soybean	mitochondrion	36.65	64.09
VIT_13s0019g04710.t01	Wine grape	cytosol	58.77	59.24
PGSC0003DMT400019235	Potato	cytosol	56.71	57.53
Solyc11g008390.1.1	Tomato	cytosol	56.4	57.21
KRH34817	Soybean	cytosol	56.08	56.17
KRG91959	Soybean	cytosol	55.92	56.1
GSMUA_Achr3P00280_001	Banana	cytosol	52.61	55.22
AT3G54850.1	Thale cress	cytosol	54.19	54.27
Bra007105.1-P	Field mustard	cytosol	54.19	54.1
CDX78273	Canola	cytosol	53.87	53.79
GSMUA_Achr1P24290_001	Banana	cytosol	50.08	51.88
TraesCS5A01G078400.1	Wheat	cytosol	49.92	46.2
TraesCS4A01G097700.1	Wheat	cytosol	47.39	41.96
TraesCS6A01G293600.1	Wheat	cytosol	40.28	39.78
CDX73439	Canola	plastid	54.19	38.07
TraesCS7A01G293900.1	Wheat	cytosol	37.12	36.49
TraesCS7A01G549700.1	Wheat	cytosol	36.97	36.22
TraesCS2A01G193000.1	Wheat	cytosol	19.91	34.9
TraesCS3A01G390200.1	Wheat	cytosol	21.8	31.44
TraesCS2A01G276400.1	Wheat	nucleus	22.75	31.3
TraesCS2A01G190800.1	Wheat	cytosol	19.59	28.44
TraesCS6A01G190700.1	Wheat	plastid	30.49	26.62
TraesCS1A01G300000.1	Wheat	cytosol	27.8	26.35
TraesCS3A01G410100.1	Wheat	cytosol	21.64	25.9
TraesCS3A01G521300.1	Wheat	cytosol	33.65	25.63
TraesCS3A01G345800.1	Wheat	plastid	27.33	25.33
TraesCS2A01G475600.1	Wheat	cytosol, plasma membrane	27.01	24.75
TraesCS3A01G410000.1	Wheat	cytosol	23.85	23.82
TraesCS5A01G198800.1	Wheat	cytosol, plasma membrane	24.33	21.97

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF111	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS4A01G498700	EnsemblPlants:TraesCS4A01G498700.1	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	TIGR:cd16664	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4A:+:743977121..743979466

Molecular Weight (calculated)

65926.3 Da

IEP (calculated)

6.648

GRAVY (calculated)

-0.195

Length

633 amino acids

Sequence
(BLAST)

001: MAAATAAAEI AALPEPRGPL RRLCGDLSRR VRLLAPLLDD PSASASPPLA DAXXXXXXXX XXXXXXXXXX XXXXXPLFLY HRHRHRYTPK IDFFPRPPTT
101: AQAMRGRDSL LREFAAVNER IQAALDQLPY HDFDMPEEVQ EQVALVHSQF KRAATRAEPA DAQLARDLAW ALSDDKPTVP ALLMRVSEKL QLETMADMKR
201: ESVALHEMVI SSGGEPEGCV DEMSSLLKKL KDCVIAQAPA AEAPGVGRSP SVKSPIIPDE FRCPISLELM QDPVIVSSGQ TYERSCIQKW LDSGHKTCPK
301: MQLALTHTSL TPNFVLKSLI AQWCEANGIE LPKNKANSHD KKAVKSSDYD NAGLVSLMNR LRGGNQDEQR AAAGEIRLLA KRNVNNRICI AEAGAIPLLV
401: NLLSSSDPRT QEHAVTALLN LSIHENNKAS IVDSNAIPKI VEVLKTGSME ARENAAATLF SLSVVDENKV TIGAAGAIPP LINLLCDGSP RGKKDAATAI
501: FNLCIYQGNK VRAVKAGIVT HLMNFLVDPT GGMIDEALTL LSILAGNQEG KSVITQSEPM PPLVEVIKTG SPRNRENAAA ILWSLCSADA EQTMAAKAAG
601: GEDALKELSE TGTDRAKRKA SSLLELMRQS EEA

Best Arabidopsis Sequence Match ( AT3G54850.1 )
(BLAST)

001: MGLTNCCSHE ELMSRLVDSV KEISGFSSSR GFIGKIQGDL VRRITLLSPF FEELIDVNVE LKKDQITGFE AMRIALDSSL ELFRSVNGGS KLFQLFDRDS
101: LVEKFRDMTV EIEAALSQIP YEKIEVSEEV REQVQLLHFQ FKRAKERWEE SDLQLSHDLA MAENVMDPDP IILKRLSQEL QLTTIDELKK ESHAIHEYFL
201: SYDGDPDDCF ERMSSLLKNL VDFVTMESSD PDPSTGSRIV SRHRSPVIPE YFRCPISLEL MKDPVIVSTG QTYERSSIQK WLDAGHKTCP KSQETLLHAG
301: LTPNYVLKSL IALWCESNGI ELPQNQGSCR TTKIGGSSSS DCDRTFVLSL LEKLANGTTE QQRAAAGELR LLAKRNVDNR VCIAEAGAIP LLVELLSSPD
401: PRTQEHSVTA LLNLSINEGN KGAIVDAGAI TDIVEVLKNG SMEARENAAA TLFSLSVIDE NKVAIGAAGA IQALISLLEE GTRRGKKDAA TAIFNLCIYQ
501: GNKSRAVKGG IVDPLTRLLK DAGGGMVDEA LAILAILSTN QEGKTAIAEA ESIPVLVEII RTGSPRNREN AAAILWYLCI GNIERLNVAR EVGADVALKE
601: LTENGTDRAK RKAASLLELI QQTEGVAVTT VP

Arabidopsis Description

PUB14U-box domain-containing protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.