Factsheet for TraesCS3A01G410000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17146	Soybean	cytosol	26.34	70.17
GSMUA_Achr9P12570_001	Banana	cytosol	31.07	65.67
TraesCS3A01G390200.1	Wheat	cytosol	43.06	62.19
TraesCS3A01G410100.1	Wheat	cytosol	36.75	44.05
PGSC0003DMT400027406	Potato	cytosol	17.03	40.45
TraesCS2A01G193000.1	Wheat	cytosol	22.87	40.17
GSMUA_Achr4P01530_001	Banana	plasma membrane	38.49	39.93
TraesCS3A01G521300.1	Wheat	cytosol	52.21	39.83
Os08t0110500-01	Rice	plasma membrane	51.1	39.32
Zm00001d035040_P007	Maize	mitochondrion	50.0	36.35
Zm00001d049708_P007	Maize	cytosol	48.42	34.81
TraesCS2A01G190800.1	Wheat	cytosol	23.66	34.4
CDX76873	Canola	cytosol, plastid	38.17	32.4
Solyc01g014230.2.1	Tomato	cytosol	40.85	31.94
EES14396	Sorghum	cytosol	50.47	31.78
PGSC0003DMT400046295	Potato	cytosol	40.38	31.18
Solyc12g100000.1.1	Tomato	cytosol, plastid	40.22	31.14
KRG98177	Soybean	cytosol	40.69	30.68
VIT_07s0129g00590.t01	Wine grape	cytosol	41.01	30.66
KRH72794	Soybean	plasma membrane	39.12	30.5
KRH30135	Soybean	cytosol	40.22	30.43
AT2G23140.1	Thale cress	cytosol	39.43	30.16
CDY18649	Canola	cytosol, plastid	32.97	29.35
CDX81323	Canola	cytosol, plastid	33.12	29.05
AT5G67340.1	Thale cress	cytosol	32.18	28.85
Bra037117.1-P	Field mustard	cytosol, plastid	33.12	28.61
TraesCS7A01G001900.1	Wheat	cytosol	23.66	28.3
Bra012155.1-P	Field mustard	cytosol	27.13	26.1
CDY57440	Canola	cytosol	26.97	25.95
CDY12838	Canola	cytosol	27.13	24.61
TraesCS4A01G498700.1	Wheat	plastid	23.82	23.85
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	37.85	23.23
CDY38931	Canola	cytosol	21.77	22.44
Bra032180.1-P	Field mustard	cytosol	20.5	22.26
TraesCS6A01G293600.1	Wheat	cytosol	21.29	21.06
TraesCS2A01G276400.1	Wheat	nucleus	15.14	20.87
TraesCS5A01G078400.1	Wheat	cytosol	22.08	20.47
TraesCS7A01G549700.1	Wheat	cytosol	20.19	19.81
TraesCS4A01G097700.1	Wheat	cytosol	21.92	19.44
TraesCS7A01G293900.1	Wheat	cytosol	19.72	19.41
TraesCS1A01G300000.1	Wheat	cytosol	17.67	16.77
TraesCS6A01G190700.1	Wheat	plastid	18.45	16.14
TraesCS3A01G345800.1	Wheat	plastid	16.72	15.52
TraesCS2A01G475600.1	Wheat	cytosol, plasma membrane	16.25	14.91
TraesCS5A01G198800.1	Wheat	cytosol, plasma membrane	15.62	14.12

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:1.25.10.10	Gene3D:3.80.10.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000225	InterPro:IPR001810	InterPro:IPR011989	InterPro:IPR032675	InterPro:LRR_dom_sf	PFAM:PF00514
PFAM:PF12937	PFscan:PS50176	PFscan:PS50181	PANTHER:PTHR23315	PANTHER:PTHR23315:SF220	SMART:SM00185
SUPFAM:SSF48371	SUPFAM:SSF52047	SUPFAM:SSF81383	EnsemblPlantsGene:TraesCS3A01G410000	EnsemblPlants:TraesCS3A01G410000.1	SEG:seg

Description

No Description!

Coordinates

chr3A:+:654357683..654360890

Molecular Weight (calculated)

69884.2 Da

IEP (calculated)

7.501

GRAVY (calculated)

-0.152

Length

634 amino acids

Sequence
(BLAST)

001: MPTSSPSFVS AEEEMRNWAE LPPDAISTIL QKLDHVDILM GAGQVCRSWR GAARDEPELW RRIDMLGHAD LSPELNLHGM AQAAVRRSAG RCEAFWGDYT
101: DDHDFLLYLA DQAPSLKSLR LISRYNFDKV LKEMIVKFPL LEELELSLCS DVGESGVFGV VGKACPQLKR FRLNKDVFYD FEASDNDRDD EAMGIATMHE
201: LRSLQLFANR LTNKGLTAIL HNCRHLESLD IRHCFNVCMD NTLRAKCDRI STLRLILPRL SDVRMRGQFV RRQTSDRGFP RIISSSSMDA QDDLSAIENQ
301: VCKLSDVRMR GQFVRRQTSD RIISSSSMDS RGDLSAIENQ VRKLIDDLRS DSIEGQRSAT SEIRLLAKHN MENRIVIADC GAINLLVGLL HSPDAKIQEN
401: AVTSLLNLSI SDNNKIAIVN AYAIDPLIHV LETGNPEAKE NSAATLSSLS VIKENKVRVG RSGAVKPLVD LLVSGTPQGK RDAAIALSYL SIIHENKGRI
501: VQADAVKQLV KLMDPALGMI DKAVAVLANL AMIPEGRTAI GETRGIPALV EVVELGSPRG KENAAAALLQ LCTNSSRYCS VVLKEGAVPP LVTLSQSGTL
601: RARETAQALL SYFRSQRHGS SLSVSKWLTG AAYL

Best Arabidopsis Sequence Match ( AT2G23140.1 )
(BLAST)

001: MVEMEVLLRS ISSFLNLSSS KHIDLDPFEK YYKRVEELLR VLKPIADVVV TSDFVFDEKL GKAFEELTQD VDQSIDLFRS WQAFSSKVYF VLQIESLLPK
101: MRDTIVDTFQ FLMSSKNHLP DELSPASLEQ CLEKIKHLSY EEISSVIDGA LRDQRDGVGP SPEILVKIGE NTGLRSNQEI LIEAVALERQ KEMAEQSENN
201: AEVEFLDQLI VIVNRMHERL LLIKQTQTSS VAILADFFCP LSLEVMTDPV IVSSGQTYEK AFIKRWIDLG LKVCPKTRQT LTHTTLIPNY TVKALIANWC
301: ETNDVKLPDP NKSTSLNELS PLLSCTDSIP STGADVSARK VSNKSHDWDA SSSETGKPSF SSRATEREGA SPSRPASALG ASSPGISGNG YGLDARRGSL
401: NDFEDRSNDS RELRTDAPGR SSVSSTTRGS VENGQTSENH HHRSPSATST VSNEEFPRAD ANENSEESAH ATPYSSDASG EIRSGPLAAT TSAATRRDLS
501: DFSPKFMDRR TRGQFWRRPS ERLGSRIVSA PSNETRRDLS EVETQVKKLV EELKSSSLDT QRQATAELRL LAKHNMDNRI VIGNSGAIVL LVELLYSTDS
601: ATQENAVTAL LNLSINDNNK KAIADAGAIE PLIHVLENGS SEAKENSAAT LFSLSVIEEN KIKIGQSGAI GPLVDLLGNG TPRGKKDAAT ALFNLSIHQE
701: NKAMIVQSGA VRYLIDLMDP AAGMVDKAVA VLANLATIPE GRNAIGQEGG IPLLVEVVEL GSARGKENAA AALLQLSTNS GRFCNMVLQE GAVPPLVALS
801: QSGTPRAREK AQALLSYFRN QRHGNAGRG

Arabidopsis Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F4ILG6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.