Factsheet for TraesCS3A01G390200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G382500.1	Wheat	cytosol	96.13	95.48
TraesCS3B01G422200.1	Wheat	cytosol	94.08	93.44
HORVU3Hr1G081380.1	Barley	cytosol	90.89	90.27
GSMUA_Achr9P12570_001	Banana	cytosol	48.75	71.33
KRH17146	Soybean	cytosol	37.81	69.75
PGSC0003DMT400027406	Potato	cytosol	27.33	44.94
TraesCS3A01G521300.1	Wheat	cytosol	84.51	44.65
TraesCS3A01G410000.1	Wheat	cytosol	62.19	43.06
Os08t0110500-01	Rice	plasma membrane	79.5	42.35
TraesCS3A01G410100.1	Wheat	cytosol	50.57	41.97
Zm00001d035040_P007	Maize	mitochondrion	77.45	38.99
GSMUA_Achr4P01530_001	Banana	plasma membrane	53.99	38.79
TraesCS2A01G193000.1	Wheat	cytosol	31.89	38.78
Zm00001d049708_P007	Maize	cytosol	74.49	37.07
TraesCS2A01G190800.1	Wheat	cytosol	35.08	35.32
EES14396	Sorghum	cytosol	79.5	34.66
CDX76873	Canola	cytosol, plastid	56.26	33.07
PGSC0003DMT400046295	Potato	cytosol	59.45	31.79
Solyc01g014230.2.1	Tomato	cytosol	58.54	31.69
Solyc12g100000.1.1	Tomato	cytosol, plastid	57.86	31.01
AT2G23140.1	Thale cress	cytosol	57.86	30.64
VIT_07s0129g00590.t01	Wine grape	cytosol	58.31	30.19
KRG98177	Soybean	cytosol	57.4	29.96
KRH72794	Soybean	plasma membrane	55.13	29.77
KRH30135	Soybean	cytosol	56.26	29.47
CDY18649	Canola	cytosol, plastid	45.33	27.95
CDX81323	Canola	cytosol, plastid	45.79	27.8
AT5G67340.1	Thale cress	cytosol	44.42	27.58
Bra037117.1-P	Field mustard	cytosol, plastid	45.79	27.38
CDY57440	Canola	cytosol	39.18	26.1
Bra012155.1-P	Field mustard	cytosol	39.18	26.1
TraesCS7A01G001900.1	Wheat	cytosol	31.44	26.04
CDY12838	Canola	cytosol	39.18	24.61
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	56.04	23.81
TraesCS4A01G498700.1	Wheat	plastid	31.44	21.8
CDY38931	Canola	cytosol	30.07	21.46
Bra032180.1-P	Field mustard	cytosol	28.47	21.4
TraesCS6A01G293600.1	Wheat	cytosol	29.16	19.97
TraesCS2A01G276400.1	Wheat	nucleus	20.73	19.78
TraesCS5A01G078400.1	Wheat	cytosol	30.07	19.3
TraesCS4A01G097700.1	Wheat	cytosol	30.98	19.02
TraesCS7A01G549700.1	Wheat	cytosol	25.28	17.18
TraesCS7A01G293900.1	Wheat	cytosol	24.83	16.93
TraesCS1A01G300000.1	Wheat	cytosol	23.69	15.57
TraesCS6A01G190700.1	Wheat	plastid	25.51	15.45
TraesCS3A01G345800.1	Wheat	plastid	22.78	14.64
TraesCS2A01G475600.1	Wheat	cytosol, plasma membrane	21.64	13.75
TraesCS5A01G198800.1	Wheat	cytosol, plasma membrane	19.82	12.41

Protein Annotations

EnsemblPlants:TraesCS3A01G390200.1	EnsemblPlantsGene:TraesCS3A01G390200	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	InterPro:IPR000225	InterPro:IPR011989	PANTHER:PTHR23315
PANTHER:PTHR23315:SF220	PFAM:PF00514	PFscan:PS50176	SEG:seg	SMART:SM00185	SUPFAM:SSF48371
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:-:638333200..638334611

Molecular Weight (calculated)

46642.1 Da

IEP (calculated)

4.796

GRAVY (calculated)

-0.187

Length

439 amino acids

Sequence
(BLAST)

001: MQMALLARLS LASSEARESS LEERHAGSDE QTLEQSTEEA SHFDSDSQVL LVSSSVDGSL PNTGQLDREC DIDNGMIGVP SDRTNYSGDA SGEVADGGLS
101: VSSAPQRENV ILPRLGDICM EGPSVRRQTA DRGFPRIISS SSMDARGDFS AIENQVRELI NDLGSDSIEG QRSATSEIRL LAKHNMENRI VIANCGAINL
201: LVGLLHSPDA KVQENAVTAL LNLSLSDINK IAIVNADAVD PLVHVLETGN PEAKENSAAT LFSLSFIEDN RARIGQSGAV KPLVDLLGNG SPRGKKDAVT
301: ALFNLSILNE NKGRIVQADA LRHLVELMDP AAGMVDKAVA VLANLATIQE GRTAIGQARG IPALVEVVEL GSAKAKENAA AALLQLCTNS NRFCNIVLQE
401: DAVPPLVALS QSGTPRAREK AQALLSYFRS QRHGNSGRR

Best Arabidopsis Sequence Match ( AT2G23140.1 )
(BLAST)

001: MVEMEVLLRS ISSFLNLSSS KHIDLDPFEK YYKRVEELLR VLKPIADVVV TSDFVFDEKL GKAFEELTQD VDQSIDLFRS WQAFSSKVYF VLQIESLLPK
101: MRDTIVDTFQ FLMSSKNHLP DELSPASLEQ CLEKIKHLSY EEISSVIDGA LRDQRDGVGP SPEILVKIGE NTGLRSNQEI LIEAVALERQ KEMAEQSENN
201: AEVEFLDQLI VIVNRMHERL LLIKQTQTSS VAILADFFCP LSLEVMTDPV IVSSGQTYEK AFIKRWIDLG LKVCPKTRQT LTHTTLIPNY TVKALIANWC
301: ETNDVKLPDP NKSTSLNELS PLLSCTDSIP STGADVSARK VSNKSHDWDA SSSETGKPSF SSRATEREGA SPSRPASALG ASSPGISGNG YGLDARRGSL
401: NDFEDRSNDS RELRTDAPGR SSVSSTTRGS VENGQTSENH HHRSPSATST VSNEEFPRAD ANENSEESAH ATPYSSDASG EIRSGPLAAT TSAATRRDLS
501: DFSPKFMDRR TRGQFWRRPS ERLGSRIVSA PSNETRRDLS EVETQVKKLV EELKSSSLDT QRQATAELRL LAKHNMDNRI VIGNSGAIVL LVELLYSTDS
601: ATQENAVTAL LNLSINDNNK KAIADAGAIE PLIHVLENGS SEAKENSAAT LFSLSVIEEN KIKIGQSGAI GPLVDLLGNG TPRGKKDAAT ALFNLSIHQE
701: NKAMIVQSGA VRYLIDLMDP AAGMVDKAVA VLANLATIPE GRNAIGQEGG IPLLVEVVEL GSARGKENAA AALLQLSTNS GRFCNMVLQE GAVPPLVALS
801: QSGTPRAREK AQALLSYFRN QRHGNAGRG

Arabidopsis Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F4ILG6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.