Factsheet for Os08t0110500-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G521300.1	Wheat	cytosol	86.17	85.44
TraesCS3D01G527900.1	Wheat	cytosol	86.17	85.44
TraesCS3B01G591000.1	Wheat	cytosol	85.56	84.84
TraesCS3B01G443200.1	Wheat	cytosol, endoplasmic reticulum	25.85	83.86
HORVU3Hr1G113910.3	Barley	cytosol	85.19	83.77
TraesCS3D01G382500.1	Wheat	cytosol	42.96	80.09
Zm00001d035040_P007	Maize	mitochondrion	84.71	80.05
HORVU3Hr1G081380.1	Barley	cytosol	42.84	79.86
TraesCS3A01G390200.1	Wheat	cytosol	42.35	79.5
TraesCS3B01G422200.1	Wheat	cytosol	42.6	79.41
KRH17146	Soybean	cytosol	22.33	77.31
Zm00001d049708_P007	Maize	cytosol	81.19	75.85
GSMUA_Achr9P12570_001	Banana	cytosol	26.94	74.0
EES14396	Sorghum	cytosol	85.32	69.81
GSMUA_Achr4P01530_001	Banana	plasma membrane	48.79	65.79
Solyc01g014230.2.1	Tomato	cytosol	51.82	52.65
PGSC0003DMT400046295	Potato	cytosol	52.43	52.62
CDX76873	Canola	cytosol, plastid	47.57	52.48
KRG98177	Soybean	cytosol	53.03	51.96
KRH30135	Soybean	cytosol	52.55	51.67
VIT_07s0129g00590.t01	Wine grape	cytosol	53.03	51.53
Solyc12g100000.1.1	Tomato	cytosol, plastid	51.09	51.4
TraesCS3A01G410000.1	Wheat	cytosol	39.32	51.1
AT2G23140.1	Thale cress	cytosol	50.0	49.7
TraesCS3A01G410100.1	Wheat	cytosol	31.8	49.53
TraesCS3B01G443500.1	Wheat	cytosol	31.8	49.53
KRH72794	Soybean	plasma membrane	48.79	49.45
PGSC0003DMT400027406	Potato	cytosol	15.66	48.31
Os01t0884400-01	Rice	plasma membrane	48.42	47.61
CDY18649	Canola	cytosol, plastid	40.53	46.91
CDX81323	Canola	cytosol, plastid	40.9	46.61
AT5G67340.1	Thale cress	cytosol	39.44	45.97
Bra037117.1-P	Field mustard	cytosol, plastid	40.9	45.91
Os07t0587500-01	Rice	cytosol	18.93	43.09
Bra032180.1-P	Field mustard	cytosol	30.22	42.64
CDY38931	Canola	cytosol	31.43	42.11
Bra012155.1-P	Field mustard	cytosol	33.5	41.88
CDY57440	Canola	cytosol	33.5	41.88
CDY12838	Canola	cytosol	35.07	41.34
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	47.69	38.04
Os06t0726900-00	Rice	cytosol	17.11	37.11
Os07t0584900-01	Rice	plastid	20.87	36.83
Os06t0102700-01	Rice	plasma membrane	26.82	36.59
Os12t0570000-01	Rice	cytosol	22.69	36.17
Os02t0488600-01	Rice	cytosol, nucleus	17.35	33.81
Os03t0435300-00	Rice	cytosol	15.53	32.0
Os08t0481200-01	Rice	cytosol	24.51	31.46
Os02t0732200-01	Rice	cytosol	23.91	30.93
Os03t0275900-01	Rice	cytosol	26.09	29.61
Os04t0348400-01	Rice	cytosol	15.78	28.32
Os02t0234300-01	Rice	cytosol	19.66	27.88
Os05t0476700-01	Rice	plastid	20.51	24.96
Os01t0823900-01	Rice	plastid	19.78	23.97
Os09t0378700-00	Rice	plasma membrane, plastid	17.48	20.22
Os08t0415600-00	Rice	cytosol	16.63	19.11

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4344480	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	ProteinID:BAD09539.1	ProteinID:BAF22734.1	ProteinID:BAT03499.1	ProteinID:EEE67919.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	EnsemblPlantsGene:Os08g0110500	EnsemblPlants:Os08t0110500-01	PFAM:PF00514	PFAM:PF04564
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF220	UniProt:Q6ZC56	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000023AE5F	InterPro:Ubox_domain	RefSeq:XP_015650497.1
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

PUB15, Plant U-Box 15, plant U-box-containing protein 15, U-box protein 15U-box/ARM repeat E3 ligase, Stress response, Regulation of cell death, Blast disease resistance (Os08t0110500-01)

Coordinates

chr8:+:551574..556921

Molecular Weight (calculated)

89424.8 Da

IEP (calculated)

5.740

GRAVY (calculated)

-0.273

Length

824 amino acids

Sequence
(BLAST)

001: MENFSPRTLL NSILRITVLT SDGSTARPKP IQKYCQNVCD ISSIVSPLIE DLCESPEEQL NEVLRELGTA INRASGLIGN WQQTTSKIYF IWQIESVISD
101: IQGCSLQLCQ LVNSLLPSLT GRACTCIEKL QDINYENMFD LVKESSLELV ETDTTSPENL SRLSSSLSLS TNLEFYMEAV SLENLRARAM RSENREEMDL
201: ADKMIPLVNY MHDHLLRETQ LLSINGVPIP ADFCCPLSLE LMSDPVIVAS GQTYERVYIK LWLDEGFTIC PKTRQRLGHS NLIPNYTVKA LIANWCESHN
301: IRLPDPMKSL KLNFPLAASA LQDSSTTGSS PLHPTVAAKG NIPGSPEADL YMRSLNRASP PHSVVHQNSH AHVNRAGHEA SIKQSSENAN GSASDVSRLS
401: LAGSETRESS LEERNAGSIG QTSEQSIEEA FQASNLDRDS HDHVGSSSVN GSLPNSGQLD AECDNGPSER TNYSSDASGE VTDGPSASSA PQREHLIPSR
501: LADVRSRGQF VRRPSERGFP RIISSSSMDT RSDLSAIENQ VRKLVDDLRS DSVDVQRSAT SDIRLLAKHN MENRIIIANC GAINLLVGLL HSPDSKTQEH
601: AVTALLNLSI NDNNKIAIAN ADAVDPLIHV LETGNPEAKE NSAATLFSLS VIEENKVRIG RSGAIKPLVD LLGNGTPRGK KDAATALFNL SILHENKARI
701: VQADAVKYLV ELMDPAAGMV DKAVAVLANL ATIPEGRTAI GQARGIPALV EVVELGSARG KENAAAALLQ LCTNSSRFCS IVLQEGAVPP LVALSQSGTP
801: RAREKAQALL SYFRSQRHGN SARR

Best Arabidopsis Sequence Match ( AT2G23140.4 )
(BLAST)

001: MEVLLRSISS FLNLSSSKHI DLDPFEKYYK RVEELLRVLK PIADVVVTSD FVFDEKLGKA FEELTQDVDQ SIDLFRSWQA FSSKVYFVLQ IESLLPKMRD
101: TIVDTFQFLM SSKNHLPDEL SPASLEQCLE KIKHLSYEEI SSVIDGALRD QRDGVGPSPE ILVKIGENTG LRSNQEILIE AVALERQKEM AEQSENNAEV
201: EFLDQLIVIV NRMHERLLLI KQTQTSSVAI LADFFCPLSL EVMTDPVIVS SGQTYEKAFI KRWIDLGLKV CPKTRQTLTH TTLIPNYTVK ALIANWCETN
301: DVKLPDPNKS TSLNELSPLL SCTDSIPSTG ADVSARKVSN KSHDWDASSS ETGKPSFSSR ATEREGASPS RPASALGASS PGISGNGYGL DARRGSLNDF
401: EDRSNDSREL RTDAPGRSSV SSTTRGSVEN GQTSENHHHR SPSATSTVSN EEFPRADANE NSEESAHATP YSSDASGEIR SGPLAATTSA ATRRDLSDFS
501: PKFMDRRTRG QFWRRPSERL GSRIVSAPSN ETRRDLSEVE TQVKKLVEEL KSSSLDTQRQ ATAELRLLAK HNMDNRIVIG NSGAIVLLVE LLYSTDSATQ
601: ENAVTALLNL SINDNNKKAI ADAGAIEPLI HVLENGSSEA KENSAATLFS LSVIEENKIK IGQSGAIGPL VDLLGNGTPR GKKDAATALF NLSIHQENKA
701: MIVQSGAVRY LIDLMDPAAG MVDKAVAVLA NLATIPEGRN AIGQEGGIPL LVEVVELGSA RGKENAAAAL LQLSTNSGRF CNMVLQEGAV PPLVALSQSG
801: TPRAREKAQA LLSYFRNQRH GNAGRG

Arabidopsis Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F4ILG6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.