Factsheet for Os06t0102700-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0201200-01
Os01t0747400-01
Os02t0656300-01
Os03t0750100-00
Os05t0182100-01
Os05t0519200-02
Os06t0102700-01
Os06t0679100-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54850.1	Os03t0750100-00	AT1G04130.1	21798944
AT3G54850.1	Os02t0656300-01	AT3G48150.1	21798944
AT3G54850.1	Os06t0679100-00	AT3G48150.1	21798944
AT3G54850.1	Os06t0102700-01	AT3G54850.1	21798944
AT3G54850.1	Os05t0182100-01	AT4G39470.1	21798944
AT3G54850.1	Os01t0201200-01	AT5G58950.1	21798944
AT3G54850.1	Os01t0747400-01	AT5G58950.1	21798944
AT3G54850.1	Os05t0519200-02	AT5G58950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G001900.1	Wheat	cytosol	74.5	84.91
EER87680	Sorghum	cytosol	84.11	84.53
TraesCS7D01G001600.2	Wheat	cytosol, plastid	83.61	83.89
HORVU7Hr1G000780.1	Barley	cytosol	81.29	83.22
Zm00001d045632_P004	Maize	cytosol, mitochondrion	82.62	79.21
TraesCS4A01G498700.1	Wheat	plastid	82.12	78.36
KRH04403	Soybean	mitochondrion	38.74	64.64
VIT_13s0019g04710.t01	Wine grape	cytosol	62.42	60.03
PGSC0003DMT400019235	Potato	cytosol	60.43	58.49
Solyc11g008390.1.1	Tomato	cytosol	59.93	58.01
KRH34817	Soybean	cytosol	59.6	56.96
KRG91959	Soybean	cytosol	59.11	56.58
GSMUA_Achr3P00280_001	Banana	cytosol	55.96	56.05
AT3G54850.1	Thale cress	cytosol	57.12	54.59
Bra007105.1-P	Field mustard	cytosol	57.12	54.42
CDX78273	Canola	cytosol	56.95	54.26
GSMUA_Achr1P24290_001	Banana	cytosol	54.14	53.52
Os12t0570000-01	Rice	cytosol	44.7	52.22
Os03t0275900-01	Rice	cytosol	50.17	41.74
Os02t0732200-01	Rice	cytosol	42.05	39.87
Os06t0726900-00	Rice	cytosol	24.5	38.95
Os08t0481200-01	Rice	cytosol	41.23	38.78
CDX73439	Canola	plastid	57.28	38.4
Os02t0488600-01	Rice	cytosol, nucleus	25.66	36.64
Os07t0587500-01	Rice	cytosol	21.52	35.91
Os04t0348400-01	Rice	cytosol	25.66	33.77
Os02t0234300-01	Rice	cytosol	28.48	29.6
Os03t0435300-00	Rice	cytosol	18.21	27.5
Os07t0584900-01	Rice	plastid	21.19	27.41
Os08t0110500-01	Rice	plasma membrane	36.59	26.82
Os01t0823900-01	Rice	plastid	29.64	26.32
Os05t0476700-01	Rice	plastid	28.81	25.7
Os01t0884400-01	Rice	plasma membrane	34.44	24.82
Os08t0415600-00	Rice	cytosol	27.15	22.87
Os09t0378700-00	Rice	plasma membrane, plastid	26.32	22.33

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
ProteinID:BAD67947.1	ProteinID:BAS95707.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005102
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0070696	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	EnsemblPlantsGene:Os06g0102700	EnsemblPlants:Os06t0102700-01	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF111	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI0000457D05	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

plant U-box-containing protein 12, U-box protein 12Similar to predicted protein. (Os06t0102700-01)

Coordinates

chr6:+:185697..188136

Molecular Weight (calculated)

65506.6 Da

IEP (calculated)

7.101

GRAVY (calculated)

-0.237

Length

604 amino acids

Sequence
(BLAST)

001: MPKRVADEIA ALPEPRGPLR RPCADLSRRV RLLAPLLDHL PASSSSSSST PLADALGAAR DLLRKTRDGS KIDQAMRGDA FLDEFAGVNR QIHLALDALP
101: YNTFHMPQEV QEQVALVHSQ FQRASTRTDP PDTQLSMDLA WALTDNPSDP ALLTRISHKL QLHTMADMKN ESIALHNMVI STAGEPDGCV DQMSSLLKKL
201: KDCVVTEDHA NDALTTRSAS IKHRSPIIPD EFRCPISLEL MQDPVIVSSG QTYERSCIQK WLDSGHKTCP KTQQPLSHTS LTPNFVLKSL ISQWCEANGI
301: ELPKNKQNSR DKKAAKSSDY DHAGLVSLMN RLRSGNQDEQ RAAAGEIRLL AKRNVNNRIC IAEAGAIPLL VNLLSSSDPR TQEHAVTALL NLSIHENNKA
401: SIVDSHAIPK IVEVLKTGSM ETRENAAATL FSLSVVDENK VTIGAAGAIP PLINLLCDGS PRGKKDAATA IFNLCIYQGN KVRAVKAGIV IHLMNFLVDP
501: TGGMIDEALS LLSILAGNPE GKIVIARSEP IPPLVEVIKT GSPRNRENAA AILWLLCSAD TEQTLAAKAA GVEDALKELS ETGTDRAKRK ASSILELMHQ
601: ANEA

Best Arabidopsis Sequence Match ( AT3G54850.1 )
(BLAST)

001: MGLTNCCSHE ELMSRLVDSV KEISGFSSSR GFIGKIQGDL VRRITLLSPF FEELIDVNVE LKKDQITGFE AMRIALDSSL ELFRSVNGGS KLFQLFDRDS
101: LVEKFRDMTV EIEAALSQIP YEKIEVSEEV REQVQLLHFQ FKRAKERWEE SDLQLSHDLA MAENVMDPDP IILKRLSQEL QLTTIDELKK ESHAIHEYFL
201: SYDGDPDDCF ERMSSLLKNL VDFVTMESSD PDPSTGSRIV SRHRSPVIPE YFRCPISLEL MKDPVIVSTG QTYERSSIQK WLDAGHKTCP KSQETLLHAG
301: LTPNYVLKSL IALWCESNGI ELPQNQGSCR TTKIGGSSSS DCDRTFVLSL LEKLANGTTE QQRAAAGELR LLAKRNVDNR VCIAEAGAIP LLVELLSSPD
401: PRTQEHSVTA LLNLSINEGN KGAIVDAGAI TDIVEVLKNG SMEARENAAA TLFSLSVIDE NKVAIGAAGA IQALISLLEE GTRRGKKDAA TAIFNLCIYQ
501: GNKSRAVKGG IVDPLTRLLK DAGGGMVDEA LAILAILSTN QEGKTAIAEA ESIPVLVEII RTGSPRNREN AAAILWYLCI GNIERLNVAR EVGADVALKE
601: LTENGTDRAK RKAASLLELI QQTEGVAVTT VP

Arabidopsis Description

PUB14U-box domain-containing protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.