Factsheet for GSMUA_Achr1P24290_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P24290_001
GSMUA_Achr2P15610_001
GSMUA_Achr3P00280_001
GSMUA_Achr3P25620_001
GSMUA_Achr4P30980_001
GSMUA_Achr6P00760_001
GSMUA_Achr6P26170_001
GSMUA_Achr9P05820_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54850.1	GSMUA_Achr3P25620_001	AT1G04130.1	21798944
AT3G54850.1	GSMUA_Achr11P...	AT3G48150.1	21798944
AT3G54850.1	GSMUA_Achr1P24290_001	AT3G54850.1	21798944
AT3G54850.1	GSMUA_Achr3P00280_001	AT3G54850.1	21798944
AT3G54850.1	GSMUA_Achr6P00760_001	AT4G39470.1	21798944
AT3G54850.1	GSMUA_Achr10P...	AT5G58950.1	21798944
AT3G54850.1	GSMUA_Achr2P15610_001	AT5G58950.1	21798944
AT3G54850.1	GSMUA_Achr4P30980_001	AT5G58950.1	21798944
AT3G54850.1	GSMUA_Achr6P26170_001	AT5G58950.1	21798944
AT3G54850.1	GSMUA_Achr9P05820_001	AT5G58950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P00280_001	Banana	cytosol	74.63	75.62
VIT_13s0019g04710.t01	Wine grape	cytosol	58.27	56.69
EER87680	Sorghum	cytosol	54.66	55.57
Solyc11g008390.1.1	Tomato	cytosol	56.46	55.29
PGSC0003DMT400019235	Potato	cytosol	56.3	55.13
TraesCS7A01G001900.1	Wheat	cytosol	47.63	54.91
HORVU7Hr1G000780.1	Barley	cytosol	52.37	54.24
TraesCS7D01G001600.2	Wheat	cytosol, plastid	53.36	54.15
Os06t0102700-01	Rice	plasma membrane	53.52	54.14
KRG91959	Soybean	cytosol	55.81	54.04
KRH34817	Soybean	cytosol	55.65	53.8
KRH04403	Soybean	mitochondrion	31.26	52.76
Zm00001d045632_P004	Maize	cytosol, mitochondrion	54.17	52.54
AT3G54850.1	Thale cress	cytosol	52.7	50.95
Bra007105.1-P	Field mustard	cytosol	52.21	50.32
CDX78273	Canola	cytosol	52.21	50.32
TraesCS4A01G498700.1	Wheat	plastid	51.88	50.08
GSMUA_Achr10P...	Banana	cytosol	46.64	45.53
GSMUA_Achr6P34170_001	Banana	cytosol	48.12	44.28
GSMUA_Achr5P28670_001	Banana	cytosol	39.77	42.63
GSMUA_Achr5P07140_001	Banana	cytosol	42.39	41.24
GSMUA_Achr9P12570_001	Banana	cytosol	17.68	36.0
GSMUA_Achr4P05030_001	Banana	cytosol	30.77	35.88
CDX73439	Canola	plastid	52.05	35.29
GSMUA_Achr8P25140_001	Banana	plastid	24.06	35.0
GSMUA_Achr4P04900_001	Banana	cytosol	29.79	34.47
GSMUA_Achr6P06560_001	Banana	cytosol	20.95	34.32
GSMUA_Achr9P15600_001	Banana	cytosol	37.64	34.02
GSMUA_Achr10P...	Banana	cytosol	47.14	33.33
GSMUA_Achr10P...	Banana	cytosol	19.97	32.62
GSMUA_Achr4P01530_001	Banana	plasma membrane	31.1	31.1
GSMUA_Achr9P01670_001	Banana	cytosol	23.57	30.9
GSMUA_Achr2P15530_001	Banana	mitochondrion	32.08	29.7
GSMUA_Achr4P03430_001	Banana	cytosol	12.93	29.37
GSMUA_Achr6P36530_001	Banana	cytosol	30.61	28.33
GSMUA_Achr10P...	Banana	mitochondrion	20.46	27.65
GSMUA_Achr7P22130_001	Banana	cytosol	28.48	27.49
GSMUA_Achr6P07710_001	Banana	cytosol	15.88	27.17
GSMUA_Achr3P18890_001	Banana	cytosol	15.71	26.74
GSMUA_Achr10P...	Banana	cytosol	16.04	26.34
GSMUA_Achr4P00200_001	Banana	plastid	29.62	25.71
GSMUA_Achr7P09440_001	Banana	mitochondrion	26.51	25.39
GSMUA_Achr9P28820_001	Banana	mitochondrion	24.71	25.21
GSMUA_Achr5P21360_001	Banana	cytosol	30.61	24.64
GSMUA_Achr4P10960_001	Banana	endoplasmic reticulum	16.2	24.38
GSMUA_Achr4P14130_001	Banana	cytosol	13.75	24.21
GSMUA_Achr4P06990_001	Banana	plastid	15.55	23.57
GSMUA_Achr9P14560_001	Banana	cytosol	22.26	23.25
GSMUA_Achr3P29830_001	Banana	cytosol	15.38	22.6
GSMUA_Achr3P06160_001	Banana	plastid	20.95	22.57
GSMUA_Achr4P11070_001	Banana	cytosol	15.38	22.27
GSMUA_Achr7P26200_001	Banana	extracellular, golgi	15.06	22.22
GSMUA_Achr5P16030_001	Banana	cytosol	16.69	21.66
GSMUA_Achr1P22790_001	Banana	mitochondrion	15.71	21.19

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr1G24290_001	EnsemblPlants:GSMUA_Achr1P24290_001	EnsemblPlants:GSMUA_Achr1T24290_001	InterPro:IPR000225	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	UniProt:M0S2N6	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF111	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI000296E3F6	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

U-box domain-containing protein 12 [Source:GMGC_GENE;Acc:GSMUA_Achr1G24290_001]

Coordinates

chr1:-:18636205..18639761

Molecular Weight (calculated)

66298.0 Da

IEP (calculated)

5.365

GRAVY (calculated)

-0.149

Length

611 amino acids

Sequence
(BLAST)

001: MSGGAGGAVA ETLLQVVAEV SALPESRGPL RQMCCDLARR VKLLAPLFDE LRDDAVSLGP AELRGLESLY AALAGAKETL RSVNDGSRLY QVLRPQKFQR
101: LFLKATESIE EALGEISLDK LNVSDEVKEQ IELLHAQLHR AKESMDLRDL QLSRDLNRAL NEGHCDPTIL KRISEKLQLK NKNDIMKESV ALHEMVISSV
201: GEPDVSVEEM SSLLKKLKDC SLLEDPTSAS IERKTSFAKH RSPVIPDDFR CPLSLELMKD PVIVSTGQTY ERSYIQKWLD SGHKTCPKTQ QYLSHTAVTP
301: NFVLKSLIAQ WCDANGIELP KTQGGHQDRK PANNSDISRD GINILLQKLA NGNQEAQRAA AGELRLLAKR NADNRISIAE AGAIPLLKQL LSSPDPRTQE
401: HAVTALLNLS INSDNKGIIV KEKAIPEIVK VLESESMEAR ENAAATLFSL STVDQNKALI GEAGAIPALI TGIVVHLMTM LDDPGASLVD EALAVLAILA
501: SIQEGKVAIA HSDPTPVLLK LMKTGSAQVR ENAAALLFSL CSGVEENLEA AKEGGAEEVL KELVETGTER AKRKAGSLLG LICQAAEASI STTYLLVGDK
601: MELCQFTLQP M

Best Arabidopsis Sequence Match ( AT3G54850.1 )
(BLAST)

001: MGLTNCCSHE ELMSRLVDSV KEISGFSSSR GFIGKIQGDL VRRITLLSPF FEELIDVNVE LKKDQITGFE AMRIALDSSL ELFRSVNGGS KLFQLFDRDS
101: LVEKFRDMTV EIEAALSQIP YEKIEVSEEV REQVQLLHFQ FKRAKERWEE SDLQLSHDLA MAENVMDPDP IILKRLSQEL QLTTIDELKK ESHAIHEYFL
201: SYDGDPDDCF ERMSSLLKNL VDFVTMESSD PDPSTGSRIV SRHRSPVIPE YFRCPISLEL MKDPVIVSTG QTYERSSIQK WLDAGHKTCP KSQETLLHAG
301: LTPNYVLKSL IALWCESNGI ELPQNQGSCR TTKIGGSSSS DCDRTFVLSL LEKLANGTTE QQRAAAGELR LLAKRNVDNR VCIAEAGAIP LLVELLSSPD
401: PRTQEHSVTA LLNLSINEGN KGAIVDAGAI TDIVEVLKNG SMEARENAAA TLFSLSVIDE NKVAIGAAGA IQALISLLEE GTRRGKKDAA TAIFNLCIYQ
501: GNKSRAVKGG IVDPLTRLLK DAGGGMVDEA LAILAILSTN QEGKTAIAEA ESIPVLVEII RTGSPRNREN AAAILWYLCI GNIERLNVAR EVGADVALKE
601: LTENGTDRAK RKAASLLELI QQTEGVAVTT VP

Arabidopsis Description

PUB14U-box domain-containing protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ40]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.