Factsheet for GSMUA_Achr10P11310_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P07710_001	Banana	cytosol	81.72	85.15
GSMUA_Achr3P18890_001	Banana	cytosol	79.84	82.73
GSMUA_Achr4P03430_001	Banana	cytosol	55.38	76.58
GSMUA_Achr5P16030_001	Banana	cytosol	83.6	66.03
Os07t0587500-01	Rice	cytosol	63.71	65.47
Bra040513.1-P	Field mustard	cytosol	45.97	65.02
Zm00001d021978_P001	Maize	cytosol	63.17	64.92
EER97464	Sorghum	cytosol	63.17	64.92
GSMUA_Achr4P14130_001	Banana	cytosol	60.48	64.84
TraesCS2B01G213900.1	Wheat	cytosol	62.9	64.82
CDY28679	Canola	cytosol	45.7	64.64
TraesCS2A01G193000.1	Wheat	cytosol	62.63	64.54
Zm00001d006726_P001	Maize	cytosol	62.37	64.44
TraesCS2D01G194400.1	Wheat	cytosol	62.37	64.27
KRH15451	Soybean	cytosol	46.77	64.21
GSMUA_Achr4P10960_001	Banana	endoplasmic reticulum	68.55	62.81
Solyc12g088360.1.1	Tomato	cytosol	44.35	60.0
GSMUA_Achr7P26200_001	Banana	extracellular, golgi	66.67	59.9
KRH05594	Soybean	cytosol	56.45	59.66
PGSC0003DMT400027542	Potato	cytosol	56.45	58.99
Solyc04g077850.2.1	Tomato	cytosol	56.45	58.99
Bra001006.1-P	Field mustard	plastid	55.65	58.47
CDX74298	Canola	plastid	55.65	58.47
CDX91947	Canola	plastid	55.11	58.07
AT3G01400.1	Thale cress	cytosol	55.38	58.03
KRH52088	Soybean	cytosol	50.81	57.8
PGSC0003DMT400030161	Potato	cytosol	55.38	57.54
CDY32692	Canola	peroxisome	54.57	57.51
Bra020360.1-P	Field mustard	cytosol	54.57	57.51
CDY02828	Canola	cytosol	54.03	56.78
AT5G58680.1	Thale cress	cytosol	52.42	54.62
VIT_18s0001g09130.t01	Wine grape	cytosol	54.3	52.06
GSMUA_Achr9P12570_001	Banana	cytosol	39.25	48.67
Os03t0435300-00	Rice	cytosol	49.73	46.25
GSMUA_Achr4P06990_001	Banana	plastid	44.09	40.69
Zm00001d003967_P001	Maize	plastid	48.66	40.22
GSMUA_Achr4P11070_001	Banana	cytosol	44.09	38.86
GSMUA_Achr3P29830_001	Banana	cytosol	40.86	36.54
GSMUA_Achr1P22790_001	Banana	mitochondrion	42.74	35.1
GSMUA_Achr10P...	Banana	cytosol	27.69	27.54
GSMUA_Achr6P06560_001	Banana	cytosol	27.15	27.08
GSMUA_Achr4P01530_001	Banana	plasma membrane	43.28	26.35
GSMUA_Achr9P01670_001	Banana	cytosol	27.96	22.32
GSMUA_Achr6P36530_001	Banana	cytosol	39.52	22.27
GSMUA_Achr8P25140_001	Banana	plastid	23.92	21.19
GSMUA_Achr5P21360_001	Banana	cytosol	39.52	19.37
GSMUA_Achr3P00280_001	Banana	cytosol	27.69	17.08
GSMUA_Achr9P15600_001	Banana	cytosol	30.11	16.57
GSMUA_Achr1P24290_001	Banana	cytosol	26.34	16.04
GSMUA_Achr10P...	Banana	cytosol	26.88	15.97
GSMUA_Achr3P06160_001	Banana	plastid	23.66	15.52
GSMUA_Achr2P15530_001	Banana	mitochondrion	25.81	14.55
GSMUA_Achr9P14560_001	Banana	cytosol	22.31	14.19
GSMUA_Achr6P34170_001	Banana	cytosol	25.0	14.01
GSMUA_Achr4P00200_001	Banana	plastid	25.81	13.64
GSMUA_Achr7P22130_001	Banana	cytosol	22.31	13.11
GSMUA_Achr4P04900_001	Banana	cytosol	18.55	13.07
GSMUA_Achr5P28670_001	Banana	cytosol	19.89	12.98
GSMUA_Achr9P28820_001	Banana	mitochondrion	20.16	12.52
GSMUA_Achr4P05030_001	Banana	cytosol	17.2	12.21
GSMUA_Achr5P07140_001	Banana	cytosol	20.43	12.1
GSMUA_Achr7P09440_001	Banana	mitochondrion	19.89	11.6
GSMUA_Achr10P...	Banana	cytosol	26.88	11.57
GSMUA_Achr10P...	Banana	mitochondrion	9.41	7.74

Protein Annotations

Gene3D:1.25.10.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr10G11310_001	EnsemblPlants:GSMUA_Achr10P11310_001	EnsemblPlants:GSMUA_Achr10T11310_001	InterPro:IPR000225
InterPro:IPR011989	UniProt:M0RHA7	PFAM:PF00514	PFscan:PS50176	PANTHER:PTHR23315	PANTHER:PTHR23315:SF64
SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI000294EA6F	SEG:seg	:	:

Description

Putative U-box domain-containing protein 4 [Source:GMGC_GENE;Acc:GSMUA_Achr10G11310_001]

Coordinates

chr10:+:20821803..20823180

Molecular Weight (calculated)

39552.4 Da

IEP (calculated)

6.720

GRAVY (calculated)

-0.078

Length

372 amino acids

Sequence
(BLAST)

001: MEAESPSSYR YMGRSYSDSG DSSGAFSDCN SDHSGEFPSS GSPTSSISSS GGGLHRLLIS CAADYSDEVV RGLISEIESP SVTVESQRRA AMELRLLAKH
101: SSENRLRIAA AGAVGPLVAL LSHPDPQLQE HGVTAILNLS LCDENKAPIA GAGAIRPLIR ILRTGTPAAR ENAACALLRL AQLDDLRAAI GRSGAIPPLV
201: ALLEFGGPRG KKDAATALFT LLASRENKAR AVEAGIVRPL LDLMADPESG MVDKAAYVLH AVVEVAEGRA AAVDEDGIPV LVEMVERGTP RQKETAVRSL
301: LEICKDSAVY RKMVAHEGAI PPLVDLSQSG TKKAKEKAES LLELLRQPRT TGNSHRSFSF NIMRLLFLGV YF

Best Arabidopsis Sequence Match ( AT3G01400.1 )
(BLAST)

001: MEMENHRPGS FTYMGRKFSD LSLNDDSSAF SDCNSDRSGE FPTASSESRR LLLSCASENS DDLINHLVSH LDSSYSIDEQ KQAAMEIRLL SKNKPENRIK
101: IAKAGAIKPL ISLISSSDLQ LQEYGVTAIL NLSLCDENKE SIASSGAIKP LVRALKMGTP TAKENAACAL LRLSQIEENK VAIGRSGAIP LLVNLLETGG
201: FRAKKDASTA LYSLCSAKEN KIRAVQSGIM KPLVELMADF GSNMVDKSAF VMSLLMSVPE SKPAIVEEGG VPVLVEIVEV GTQRQKEMAV SILLQLCEES
301: VVYRTMVARE GAIPPLVALS QAGTSRAKQK AEALIELLRQ PRSISNGGAR SSSQL

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SGH8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.