Factsheet for GSMUA_Achr4P06990_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P11070_001	Banana	cytosol	83.62	79.86
GSMUA_Achr3P29830_001	Banana	cytosol	80.4	77.88
GSMUA_Achr1P22790_001	Banana	mitochondrion	77.42	68.87
HORVU7Hr1G038870.1	Barley	plastid	47.15	66.2
TraesCS2A01G190800.1	Wheat	cytosol	70.72	65.37
Zm00001d021951_P001	Maize	plastid	72.21	62.58
EER97453	Sorghum	plastid	72.46	62.39
TraesCS2D01G197200.1	Wheat	plastid	70.97	62.31
TraesCS2B01G216300.1	Wheat	plastid	70.72	62.23
HORVU2Hr1G036080.15	Barley	plastid	70.72	62.23
Zm00001d006705_P001	Maize	plastid	70.47	61.21
Os07t0584900-01	Rice	plastid	70.72	61.03
VIT_00s2269g00010.t01	Wine grape	plastid	62.03	55.31
KRH51173	Soybean	cytosol	57.82	54.44
KRH01984	Soybean	cytosol	57.32	54.35
Solyc04g014810.2.1	Tomato	plastid	59.55	53.22
PGSC0003DMT400060674	Potato	plastid	59.31	52.99
KRH11541	Soybean	plastid	59.55	52.52
Solyc11g012440.1.1	Tomato	cytosol, plastid	59.55	52.29
PGSC0003DMT400034564	Potato	nucleus, plastid	59.31	52.18
KRH36562	Soybean	plastid	59.31	52.18
Bra012713.1-P	Field mustard	cytosol	56.58	50.11
CDY09688	Canola	cytosol	56.33	50.0
CDX90518	Canola	plastid	56.33	49.89
GSMUA_Achr4P03430_001	Banana	cytosol	33.25	49.81
GSMUA_Achr9P12570_001	Banana	cytosol	36.72	49.33
Bra038470.1-P	Field mustard	plastid	57.07	49.15
AT4G16490.1	Thale cress	plastid	56.58	48.31
GSMUA_Achr6P07710_001	Banana	cytosol	40.2	45.38
GSMUA_Achr10P...	Banana	cytosol	40.69	44.09
GSMUA_Achr3P18890_001	Banana	cytosol	38.71	43.45
GSMUA_Achr4P14130_001	Banana	cytosol	35.24	40.92
GSMUA_Achr4P10960_001	Banana	endoplasmic reticulum	38.71	38.42
GSMUA_Achr7P26200_001	Banana	extracellular, golgi	36.48	35.51
GSMUA_Achr5P16030_001	Banana	cytosol	39.95	34.18
GSMUA_Achr6P06560_001	Banana	cytosol	26.55	28.69
GSMUA_Achr10P...	Banana	cytosol	26.55	28.61
GSMUA_Achr4P01530_001	Banana	plasma membrane	37.97	25.04
GSMUA_Achr9P01670_001	Banana	cytosol	26.8	23.18
GSMUA_Achr6P36530_001	Banana	cytosol	35.24	21.52
GSMUA_Achr8P25140_001	Banana	plastid	22.33	21.43
GSMUA_Achr5P21360_001	Banana	cytosol	36.23	19.24
GSMUA_Achr3P06160_001	Banana	plastid	26.05	18.52
GSMUA_Achr3P00280_001	Banana	cytosol	26.05	17.41
GSMUA_Achr9P14560_001	Banana	cytosol	24.81	17.09
GSMUA_Achr9P15600_001	Banana	cytosol	26.3	15.68
GSMUA_Achr1P24290_001	Banana	cytosol	23.57	15.55
GSMUA_Achr10P...	Banana	cytosol	23.82	15.34
GSMUA_Achr4P00200_001	Banana	plastid	25.06	14.35
GSMUA_Achr6P34170_001	Banana	cytosol	23.57	14.31
GSMUA_Achr2P15530_001	Banana	mitochondrion	23.33	14.24
GSMUA_Achr7P22130_001	Banana	cytosol	22.33	14.22
GSMUA_Achr4P05030_001	Banana	cytosol	17.87	13.74
GSMUA_Achr5P28670_001	Banana	cytosol	19.11	13.51
GSMUA_Achr4P04900_001	Banana	cytosol	16.87	12.88
GSMUA_Achr9P28820_001	Banana	mitochondrion	17.62	11.85
GSMUA_Achr5P07140_001	Banana	cytosol	18.11	11.62
GSMUA_Achr7P09440_001	Banana	mitochondrion	18.36	11.6
GSMUA_Achr10P...	Banana	cytosol	24.81	11.57
GSMUA_Achr10P...	Banana	mitochondrion	6.7	5.97

Protein Annotations

EnsemblPlants:GSMUA_Achr4P06990_001	EnsemblPlants:GSMUA_Achr4T06990_001	EnsemblPlantsGene:GSMUA_Achr4G06990_001	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	InterPro:IPR000225	InterPro:IPR011989
PANTHER:PTHR23315	PANTHER:PTHR23315:SF129	PFAM:PF00514	PFscan:PS50176	SEG:seg	SMART:SM00185
SUPFAM:SSF48371	UniParc:UPI0002955AE4	UniProt:M0SLR6	MapMan:35.1	:	:

Description

Putative U-box domain-containing protein 4 [Source:GMGC_GENE;Acc:GSMUA_Achr4G06990_001]

Coordinates

chr4:+:5215355..5216775

Molecular Weight (calculated)

41422.9 Da

IEP (calculated)

8.476

GRAVY (calculated)

0.036

Length

403 amino acids

Sequence
(BLAST)

001: MRTIRSNLFR NDPPPVASPS ARSGAVSENL TDSVVDFQLR ELAVGPPRPS DAKSAASSTE SAAELLELSR DFSDYSSFNS DISGELQRLA SIPLTEVPPS
101: PATSGPVDIE ALPAVKACVE GLGSPSPEVK RAAAAGIRLL AKHRSDFRAL IGASGGIPPL VPLLKSTDPA AQESAVTALL NLSLEEANKG PITAAGAIKP
201: LVYALRTGTA VAKQNAACAL LSLSMIEENR ATIGACGAIP PLVALLVGGT SRGKKDALTT LYKLCSARRN KERAVSAGAV PPLLELVGER GGGTTEKSLV
301: VLGSLAAIPE GREAVVAAGG IPMLVEAIEA GPARGKEFAV HVLLQLCADS AHNRGLLVRE GAIPPLVALS QSGSSRAKQK AEMLLGYLRE QRQDGGATPA
401: PAR

Best Arabidopsis Sequence Match ( AT4G16490.1 )
(BLAST)

001: MVSVEEPLSH SNSTRFPLTT DFYGSSSPSA ARLHRQAGRS MRTVRSNFYQ SGDQSCSFVG SIGDKSEYAS EFLSDSVIDM RLGELALKNS NSLNSNASSM
101: KEEAFLDISQ AFSDFSACSS DISGELQRLA CLPSPEADRN ESGGDNEAEH DPELEREPCL GFLQRENFST EIIECISPED LQPTVKLCID GLRSSSVAIK
201: RSAAAKLRLL AKNRADNRVL IGESGAIQAL IPLLRCNDPW TQEHAVTALL NLSLHDQNKA VIAAGGAIKS LVWVLKTGTE TSKQNAACAL LSLALLEENK
301: GSIGACGAIP PLVSLLLNGS CRGKKDALTT LYKLCTLQQN KERAVTAGAV KPLVDLVAEE GTGMAEKAMV VLSSLAAIDD GKEAIVEEGG IAALVEAIED
401: GSVKGKEFAI LTLLQLCSDS VRNRGLLVRE GAIPPLVGLS QSGSVSVRAK RKAERLLGYL REPRKEASSS SP

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JMH0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.