Factsheet for Solyc11g012440.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034564	Potato	nucleus, plastid	97.39	97.6
Solyc04g014810.2.1	Tomato	plastid	80.83	82.26
VIT_00s2269g00010.t01	Wine grape	plastid	76.69	77.88
KRH36562	Soybean	plastid	73.42	73.58
KRH11541	Soybean	plastid	72.55	72.87
KRH01984	Soybean	cytosol	66.67	72.0
KRH51173	Soybean	cytosol	67.1	71.96
Bra012713.1-P	Field mustard	cytosol	69.06	69.67
CDX90518	Canola	plastid	68.85	69.45
CDY09688	Canola	cytosol	68.63	69.38
AT4G16490.1	Thale cress	plastid	70.37	68.43
Bra038470.1-P	Field mustard	plastid	69.72	68.38
GSMUA_Achr4P06990_001	Banana	plastid	52.29	59.55
HORVU7Hr1G038870.1	Barley	plastid	36.17	57.84
GSMUA_Achr3P29830_001	Banana	cytosol	51.42	56.73
GSMUA_Achr4P11070_001	Banana	cytosol	50.76	55.21
EER97453	Sorghum	plastid	55.56	54.49
Zm00001d021951_P001	Maize	plastid	55.12	54.41
HORVU2Hr1G036080.15	Barley	plastid	54.03	54.15
TraesCS2D01G197200.1	Wheat	plastid	53.81	53.81
Os07t0584900-01	Rice	plastid	54.68	53.75
TraesCS2B01G216300.1	Wheat	plastid	53.59	53.71
TraesCS2A01G190800.1	Wheat	cytosol	50.76	53.44
GSMUA_Achr1P22790_001	Banana	mitochondrion	52.72	53.42
Zm00001d006705_P001	Maize	plastid	53.59	53.02
Solyc12g088360.1.1	Tomato	cytosol	30.5	50.91
Solyc04g077850.2.1	Tomato	cytosol	36.17	46.63
Solyc06g051090.1.1	Tomato	cytosol	28.76	23.49
Solyc09g056450.2.1	Tomato	cytosol	22.44	22.94
Solyc04g050780.1.1	Tomato	cytosol	20.7	22.04
Solyc04g050770.1.1	Tomato	cytosol	20.7	21.44
Solyc12g094610.1.1	Tomato	cytosol	25.05	21.42
Solyc11g008390.1.1	Tomato	cytosol	28.76	21.15
Solyc11g066040.1.1	Tomato	cytosol	30.5	21.12
Solyc06g076040.2.1	Tomato	cytosol	29.63	20.57
Solyc09g025270.2.1	Tomato	cytosol	32.9	20.16
Solyc01g014230.2.1	Tomato	cytosol	35.29	19.98
Solyc12g100000.1.1	Tomato	cytosol, plastid	34.64	19.41
Solyc04g007640.2.1	Tomato	cytosol	27.23	19.32
Solyc05g008230.2.1	Tomato	cytosol	27.02	19.08
Solyc04g082440.2.1	Tomato	cytosol	25.93	18.34
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	25.05	15.88
Solyc03g114160.1.1	Tomato	cytosol	23.31	15.69
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	23.31	15.62
Solyc09g018230.1.1	Tomato	plastid	20.7	13.81

Protein Annotations

Gene3D:1.25.10.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	InterPro:IPR000225	InterPro:IPR011989	UniProt:K4D648	PFAM:PF00514	PFscan:PS50176
PANTHER:PTHR23315	PANTHER:PTHR23315:SF129	SMART:SM00185	SUPFAM:SSF48371	EnsemblPlantsGene:Solyc11g012440.1	EnsemblPlants:Solyc11g012440.1.1
UniParc:UPI0002769F73	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:+:5278466..5280485

Molecular Weight (calculated)

48978.8 Da

IEP (calculated)

6.911

GRAVY (calculated)

-0.127

Length

459 amino acids

Sequence
(BLAST)

001: MVSLEDSHSH NSVSSSAHFG QTRPYYYTPP PPSSIKINRA MGRSMRTIRS TIFRTDCSGS EHSGAISENM TDSVIDIRLG ELAKKPPVNN KGSSSDEDYL
101: QLSQAFSDFS ACSSDISGEL QRLASVPVSD LVLTQNPNSK PEPEPEPCLG FLEREKFSTE IIESISPEDL QPTVKLCVDS LHSPSVAVKR SAAAKLRLLA
201: KNRADNRALI GESGAIPVLI PLLRCTDPWT QEHAVTALLN LSLHEPNKVL ITSSGAIKSL IYVLKTGTDT SKQNAACGLL SLALIDENKL SIGACGAIPP
301: LVCLLINGTN RGKKDALTTL YKLCSMKLNK ERAISAGAVK PLVGLVCEQG NGLAEKAMVV LSLLTGIDSG KEAIVEEGGI AALVEAIEDS SDKGKEFAVL
401: TLLQLCTDSV RNRGLLVREG GIPPLVALSQ NGTAKAKHKA ETLLGYLREP RQEASTSTP

Best Arabidopsis Sequence Match ( AT4G16490.1 )
(BLAST)

001: MVSVEEPLSH SNSTRFPLTT DFYGSSSPSA ARLHRQAGRS MRTVRSNFYQ SGDQSCSFVG SIGDKSEYAS EFLSDSVIDM RLGELALKNS NSLNSNASSM
101: KEEAFLDISQ AFSDFSACSS DISGELQRLA CLPSPEADRN ESGGDNEAEH DPELEREPCL GFLQRENFST EIIECISPED LQPTVKLCID GLRSSSVAIK
201: RSAAAKLRLL AKNRADNRVL IGESGAIQAL IPLLRCNDPW TQEHAVTALL NLSLHDQNKA VIAAGGAIKS LVWVLKTGTE TSKQNAACAL LSLALLEENK
301: GSIGACGAIP PLVSLLLNGS CRGKKDALTT LYKLCTLQQN KERAVTAGAV KPLVDLVAEE GTGMAEKAMV VLSSLAAIDD GKEAIVEEGG IAALVEAIED
401: GSVKGKEFAI LTLLQLCSDS VRNRGLLVRE GAIPPLVGLS QSGSVSVRAK RKAERLLGYL REPRKEASSS SP

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JMH0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.