Factsheet for Solyc04g050770.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039084	Potato	cytosol	86.68	86.68
Solyc04g050780.1.1	Tomato	cytosol	76.75	78.89
VIT_04s0043g00840.t01	Wine grape	cytosol	51.69	50.33
KRH68828	Soybean	cytosol	47.4	48.84
Solyc09g056450.2.1	Tomato	cytosol	48.98	48.33
KRG97080	Soybean	cytosol, nucleus	47.86	48.18
GSMUA_Achr10P...	Banana	cytosol	38.37	45.45
GSMUA_Achr6P06560_001	Banana	cytosol	37.7	44.77
Bra001247.1-P	Field mustard	cytosol	46.05	44.74
Bra040374.1-P	Field mustard	cytosol	44.92	44.12
CDX74050	Canola	cytosol	45.37	44.08
KRG92593	Soybean	cytosol	44.02	44.02
CDY08002	Canola	cytosol	44.92	43.74
AT3G07360.1	Thale cress	cytosol	45.15	43.48
CDY28059	Canola	cytosol	44.47	42.64
CDY71737	Canola	cytosol	44.47	42.64
Bra029642.1-P	Field mustard	cytosol	44.24	42.42
GSMUA_Achr9P01670_001	Banana	cytosol	43.12	40.99
Os02t0488600-01	Rice	cytosol, nucleus	38.15	39.95
TraesCS2A01G276400.1	Wheat	nucleus	37.7	36.3
TraesCS2B01G294100.1	Wheat	nucleus	37.7	36.3
EES06804	Sorghum	cytosol	37.92	36.21
TraesCS2D01G275400.1	Wheat	nucleus	37.25	35.87
HORVU2Hr1G067610.6	Barley	cytosol	38.37	35.87
Os04t0348400-01	Rice	cytosol	36.34	35.08
Zm00001d016501_P001	Maize	cytosol	36.79	35.05
CDY68352	Canola	cytosol	34.09	33.11
AT5G18320.1	Thale cress	cytosol	33.18	32.1
CDY38506	Canola	cytosol	32.73	31.8
Solyc12g088360.1.1	Tomato	cytosol	19.19	30.91
AT5G18330.1	Thale cress	cytosol	29.57	29.44
CDX70810	Canola	cytosol	30.7	28.81
Bra006451.1-P	Field mustard	cytosol	29.57	28.05
AT5G18340.1	Thale cress	nucleus	28.67	27.85
Solyc04g077850.2.1	Tomato	cytosol	21.9	27.25
CDY51235	Canola	extracellular, golgi	29.35	25.05
Solyc12g094610.1.1	Tomato	cytosol	27.99	23.09
Solyc11g008390.1.1	Tomato	cytosol	30.93	21.96
Solyc06g076040.2.1	Tomato	cytosol	32.51	21.79
Solyc04g014810.2.1	Tomato	plastid	21.44	21.06
Solyc11g066040.1.1	Tomato	cytosol	31.38	20.97
Solyc11g012440.1.1	Tomato	cytosol, plastid	21.44	20.7
Solyc06g051090.1.1	Tomato	cytosol	26.19	20.64
Solyc04g007640.2.1	Tomato	cytosol	29.8	20.4
Solyc05g008230.2.1	Tomato	cytosol	28.67	19.54
Solyc04g082440.2.1	Tomato	cytosol	28.44	19.41
Solyc09g025270.2.1	Tomato	cytosol	28.67	16.96
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	27.54	16.85
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	25.28	16.35
Solyc03g114160.1.1	Tomato	cytosol	24.83	16.13
Solyc12g100000.1.1	Tomato	cytosol, plastid	29.8	16.12
Solyc01g014230.2.1	Tomato	cytosol	28.89	15.78
Solyc09g018230.1.1	Tomato	plastid	24.38	15.7
Bra002153.1-P	Field mustard	cytosol	32.73	10.61
CDX70805	Canola	cytosol	30.93	8.89
CDY51234	Canola	cytosol	31.38	8.39
Bra006452.1-P	Field mustard	cytosol	31.38	8.37

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
UniProt:K4BS41	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF75	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc04g050770.1	EnsemblPlants:Solyc04g050770.1.1	UniParc:UPI0002766DBE	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4BS41]

Coordinates

chr4:+:48255605..48257352

Molecular Weight (calculated)

49803.7 Da

IEP (calculated)

5.722

GRAVY (calculated)

-0.169

Length

443 amino acids

Sequence
(BLAST)

001: MAESSNQGER MQALALVSAD ELKRELQRKA KCIVEDDDYT IHDTEEVMDC LSALKDLKLR PAPPPQYLCP ISHQLMKDPV VLASGQTYDR PFIEKWLNKG
101: NRTCPETKEL LSNLDLIPNL LMKELISLWC KKHGLELPDK DQGIITEADR DRFNSLLHIL SSNDDIPEKI KAAEQVRMLT KQFPSLRAFF EEDSIAVTKL
201: LDPLMSENVN DHPKLQEHLI TTVTNISIHD ANKKLVATNP VVIPLLIESL TFGTIETRSN SAAALCTLSS LESNKCIIMK AGALEPLVKL LDEGPLLAMK
301: DAAAAIYSLI LVKENRAVAV FEGVVKVIMK KITDRILIDK MLVLLALLSS YDKAIEQMIK LEAVSCLLSI IKEDRSDESK EHCITILHTL CYNDRTRLKE
401: MWRDESVNGA IANLALNGTT RAKRKAKEIV ERIDKYFSDE QSS

Best Arabidopsis Sequence Match ( AT3G07360.1 )
(BLAST)

001: MAKTGVFDSD PTAIAKAKEL KREMKKLLIK IDDEDDLGVQ TIDQLQDALS ALREATMRKM AKSSSLEMLE TVSCPEEFRC PLSNELMRDP VVLASGQTYD
101: KLFIQKWLSS GNRTCPKTQQ VLPHTALTPN LLIREMISKW CKKNGLETKS QYHPNLVNED ETVTRSDREI FNSLLCKVSS SNLQDQKSAA KELRLLTRKG
201: TEFRALFGES PDEITRLVNP LLHGSNPDEK LQEDVVTTLL NISIHDDSNK KLVCENPNVI PLLIDALRRG TVATRSNAAA AIFTLSALDS NKVLIGKSGI
301: LKPLIDLLEE GNPLAIKDVA AAIFTLCIAH ENRSRAVRDG AVRVLGKKIS NGLYVDELLA ILAMLVTHWK AVEELGELGG VSWLLKITRE SECKRNKENA
401: IVILHTICFS DRTKWKEIKE EENAHGTITK LSREGTSRAQ RKANGILDRL RKAMNLTHTA

Arabidopsis Description

PUB9RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.