Factsheet for PGSC0003DMT400039084

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g050770.1.1	Tomato	cytosol	86.68	86.68
PGSC0003DMT400011486	Potato	cytosol	65.69	81.51
VIT_04s0043g00840.t01	Wine grape	cytosol	52.37	50.99
PGSC0003DMT400016998	Potato	cytosol	50.34	49.67
KRH68828	Soybean	cytosol	47.86	49.3
KRG97080	Soybean	cytosol, nucleus	47.86	48.18
Bra001247.1-P	Field mustard	cytosol	46.73	45.39
CDX74050	Canola	cytosol	46.5	45.18
KRG92593	Soybean	cytosol	44.7	44.7
CDY08002	Canola	cytosol	45.6	44.4
Bra040374.1-P	Field mustard	cytosol	44.7	43.9
GSMUA_Achr10P...	Banana	cytosol	36.79	43.58
AT3G07360.1	Thale cress	cytosol	44.92	43.26
Bra029642.1-P	Field mustard	cytosol	44.92	43.07
CDY28059	Canola	cytosol	44.92	43.07
GSMUA_Achr6P06560_001	Banana	cytosol	36.12	42.9
CDY71737	Canola	cytosol	44.7	42.86
GSMUA_Achr9P01670_001	Banana	cytosol	42.89	40.77
Os02t0488600-01	Rice	cytosol, nucleus	37.47	39.24
EES06804	Sorghum	cytosol	38.15	36.42
TraesCS2A01G276400.1	Wheat	nucleus	37.7	36.3
TraesCS2B01G294100.1	Wheat	nucleus	37.7	36.3
TraesCS2D01G275400.1	Wheat	nucleus	37.25	35.87
HORVU2Hr1G067610.6	Barley	cytosol	38.37	35.87
Zm00001d016501_P001	Maize	cytosol	37.25	35.48
Os04t0348400-01	Rice	cytosol	36.34	35.08
CDY68352	Canola	cytosol	34.54	33.55
AT5G18320.1	Thale cress	cytosol	33.86	32.75
CDY38506	Canola	cytosol	32.51	31.58
AT5G18330.1	Thale cress	cytosol	30.7	30.56
CDX70810	Canola	cytosol	31.38	29.45
Bra006451.1-P	Field mustard	cytosol	30.47	28.91
AT5G18340.1	Thale cress	nucleus	29.35	28.51
PGSC0003DMT400027542	Potato	cytosol	21.44	26.69
PGSC0003DMT400030161	Potato	cytosol	20.99	25.98
CDY51235	Canola	extracellular, golgi	30.25	25.82
PGSC0003DMT400060674	Potato	plastid	21.44	21.06
PGSC0003DMT400034564	Potato	nucleus, plastid	21.67	20.96
PGSC0003DMT400019235	Potato	cytosol	29.12	20.67
PGSC0003DMT400078166	Potato	cytosol	30.47	20.42
PGSC0003DMT400015349	Potato	cytosol	29.57	20.25
PGSC0003DMT400001049	Potato	cytosol	30.02	20.03
PGSC0003DMT400078473	Potato	cytosol	29.12	19.85
PGSC0003DMT400082693	Potato	cytosol	10.84	19.67
PGSC0003DMT400025648	Potato	cytosol	26.86	18.34
PGSC0003DMT400075612	Potato	cytosol	26.64	18.29
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	22.57	17.86
PGSC0003DMT400027406	Potato	cytosol	10.38	17.23
PGSC0003DMT400077205	Potato	cytosol	26.19	17.08
PGSC0003DMT400073254	Potato	cytosol	27.31	16.71
PGSC0003DMT400026700	Potato	cytosol	28.67	16.32
PGSC0003DMT400062931	Potato	cytosol	25.06	16.28
PGSC0003DMT400046295	Potato	cytosol	28.89	15.59
PGSC0003DMT400071349	Potato	plastid	24.15	15.46
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	15.35	14.95
Bra002153.1-P	Field mustard	cytosol	32.96	10.69
CDX70805	Canola	cytosol	31.6	9.09
CDY51234	Canola	cytosol	32.96	8.81
Bra006452.1-P	Field mustard	cytosol	32.96	8.79

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102582342	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M1B7R8
PFAM:PF04564	EnsemblPlantsGene:PGSC0003DMG400015113	PGSC:PGSC0003DMG400015113	EnsemblPlants:PGSC0003DMT400039084	PFscan:PS50176	PFscan:PS51698
PANTHER:PTHR23315	PANTHER:PTHR23315:SF75	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000294E3D6
InterPro:Ubox_domain	RefSeq:XP_006340482.2	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Spotted leaf protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015113]

Coordinates

chr4:-:46380876..46383046

Molecular Weight (calculated)

49620.4 Da

IEP (calculated)

6.433

GRAVY (calculated)

-0.131

Length

443 amino acids

Sequence
(BLAST)

001: MAESSKQGGR LQALAWVSAD ELKRELQRRV NCIVEDADYS IEDTDEAMHY LSALKDLKLR ATPPPEYLCP LSHQLMKDPV VLASGRTYDR PFIERWFKIG
101: NRTCPETKEV LSNLDLIPNL LMREHISLWC KEHGIELPDK DQGIITEADR DHFNSLLQIL SSNDDVPEKI KAAKQVRMLT KQFPFLRAFF EEDSIAVTKL
201: LDPLMSGNVN DHPKLQEDLI TTVMNISLHD ANKKLVATNP VVIPLLVESL TSGTLETRSN SAAALCALSL LESNKCIIMK AGALEPLVKL LDEGPLLAMK
301: DAAAAIYSLS LVKENRAIAV FEGAIKVIMK KITGRILIDK MFVLLAMLSS YDKAIEQMIK LDAVSCLLSI IKEDTSDNSK EHCIAILHTL CYNDRTRLQE
401: MWRDESVKGT IANLALNGTT RAKRKAKEIV ERIDKYFSGA QTS

Best Arabidopsis Sequence Match ( AT3G07360.1 )
(BLAST)

001: MAKTGVFDSD PTAIAKAKEL KREMKKLLIK IDDEDDLGVQ TIDQLQDALS ALREATMRKM AKSSSLEMLE TVSCPEEFRC PLSNELMRDP VVLASGQTYD
101: KLFIQKWLSS GNRTCPKTQQ VLPHTALTPN LLIREMISKW CKKNGLETKS QYHPNLVNED ETVTRSDREI FNSLLCKVSS SNLQDQKSAA KELRLLTRKG
201: TEFRALFGES PDEITRLVNP LLHGSNPDEK LQEDVVTTLL NISIHDDSNK KLVCENPNVI PLLIDALRRG TVATRSNAAA AIFTLSALDS NKVLIGKSGI
301: LKPLIDLLEE GNPLAIKDVA AAIFTLCIAH ENRSRAVRDG AVRVLGKKIS NGLYVDELLA ILAMLVTHWK AVEELGELGG VSWLLKITRE SECKRNKENA
401: IVILHTICFS DRTKWKEIKE EENAHGTITK LSREGTSRAQ RKANGILDRL RKAMNLTHTA

Arabidopsis Description

PUB9RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJC7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.