Factsheet for PGSC0003DMT400026700

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g025270.2.1	Tomato	cytosol	93.7	97.33
VIT_07s0005g03520.t01	Wine grape	cytosol	61.05	60.36
GSMUA_Achr6P36530_001	Banana	cytosol	46.66	55.0
KRG95672	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	55.53	53.07
Bra007097.1-P	Field mustard	cytosol	45.89	50.85
CDY64696	Canola	cytosol, extracellular, mitochondrion, plastid	48.2	50.81
Bra014787.1-P	Field mustard	cytosol	48.2	50.81
CDY02891	Canola	cytosol	48.07	50.75
CDX78262	Canola	cytosol	45.5	50.43
CDX73449	Canola	cytosol	45.37	50.14
GSMUA_Achr5P21360_001	Banana	cytosol	48.71	49.93
AT3G54790.1	Thale cress	cytosol	48.33	49.47
KRH67390	Soybean	cytosol, plastid	53.73	48.83
KRH32190	Soybean	cytosol	40.1	47.06
PGSC0003DMT400030161	Potato	cytosol	21.21	46.09
PGSC0003DMT400027542	Potato	cytosol	20.31	44.38
PGSC0003DMT400046295	Potato	cytosol	42.03	39.83
PGSC0003DMT400019235	Potato	cytosol	28.92	36.06
PGSC0003DMT400027406	Potato	cytosol	12.34	35.96
PGSC0003DMT400001049	Potato	cytosol	29.31	34.34
PGSC0003DMT400016998	Potato	cytosol	19.67	34.08
PGSC0003DMT400078166	Potato	cytosol	28.79	33.89
PGSC0003DMT400034564	Potato	nucleus, plastid	19.67	33.41
PGSC0003DMT400060674	Potato	plastid	19.02	32.82
PGSC0003DMT400078473	Potato	cytosol	26.35	31.54
PGSC0003DMT400011486	Potato	cytosol	14.27	31.09
PGSC0003DMT400015349	Potato	cytosol	25.58	30.76
PGSC0003DMT400025648	Potato	cytosol	25.58	30.66
PGSC0003DMT400075612	Potato	cytosol	25.19	30.39
PGSC0003DMT400082693	Potato	cytosol	9.0	28.69
PGSC0003DMT400039084	Potato	cytosol	16.32	28.67
PGSC0003DMT400077205	Potato	cytosol	24.81	28.42
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	18.12	25.18
PGSC0003DMT400073254	Potato	cytosol	23.26	25.0
PGSC0003DMT400062931	Potato	cytosol	20.69	23.61
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	13.62	23.3
PGSC0003DMT400071349	Potato	plastid	20.57	23.12

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102596908	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
UniProt:M1ANL6	PFAM:PF00514	PFAM:PF04564	EnsemblPlantsGene:PGSC0003DMG400010317	PGSC:PGSC0003DMG400010317	EnsemblPlants:PGSC0003DMT400026700
PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF119	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000296F450	InterPro:Ubox_domain	RefSeq:XP_006351668.1	RefSeq:XP_015166071.1
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

Arm repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010317]

Coordinates

chr9:-:50081904..50087689

Molecular Weight (calculated)

85367.3 Da

IEP (calculated)

6.589

GRAVY (calculated)

-0.232

Length

778 amino acids

Sequence
(BLAST)

001: MELTSVRCLM NSISRFIHLV TCLTSKSMPG QKNYKNIATL LKLLKPVLDD VAQQKAPSDE TICRQCEELD VAINEARELL EEWSPKKSKI LWVLQSEPEL
101: LKIQSIALKL SHILCQLLES SPPSLGPSEI QPFIQEIQKF EVGQISKQMN MAPEVGKILV SESLTEMIHS LNFVSHEELL NECIALEKER MKAKDNETRG
201: DLDKISLSID LFSDIRDCML ELDHFKAIDG IKIPPYFRCP LSLELMVNPV IIASGQTYEK ASIQKWLDHG LTTCPRTNQA LAHSNLIPNY TVKALIENWC
301: EVNKVRLDGN PESTQDGITS NSVHLTNMDN VRGSSDPSNS TSRLCHQGGQ AFESQKVDCT SELSEEEFSS CRIREAEKSG HTSPGISYIH SRSESVSSAV
401: SSIEYLPSAS TDVSRISSKH DNVSDTSGEV QCDYRISSPC NKSVGNSPNL SARQYRSSKT MSEMAVNVLH NHARQLSLPT KSASDDLTTS SHVEKLIRDL
501: ESQSTEVQMA AAAEFRFLAK HNMENRAIIG RCGAIAPLIS LLNSDVKPTQ EHAVTALLNL SINEDIKAMI AEQGALEPLI YVLRTGNAGA KENAAAALFS
601: LSLLEEYRKK IGRSGAVKAL VDLLGLGTIR GKKDAATALF NLSIFHENKA RIIQVGAVKH LIRLLDPSNE LVDKAVALLA NLSTISEGCL AIAREEGIPS
701: LVEIVETGSQ RGKENAASIL LQLCLNSPKY CRLVLQEGAV PPLVALSQSG SPRAKEKAQQ LLSHFRSQRE AATGRGKS

Best Arabidopsis Sequence Match ( AT3G54790.3 )
(BLAST)

001: MDPVPVRCLL NSISRYLHLV ACQTIRFNPI QTCIGNMVLL LKLLKPLLDE VVDCKIPSDD CLYKGCEDLD SVVNQAREFL EDWSPKLSKL FGVFQCEVLL
101: GKVQTCSLEI SRILLQLSQS SPVTSSVQSV ERCVQETESF KQEGTLMELM ENALRNQKDD ITSLDNNHLE SIIQMLGLIS NQDLLKESIT VEKERIRSQA
201: SKSEEDMEQT EQLIELVLCI REHMLKTEFL EVAKGISIPP YFRCPLSTEL MLDPVIVASG QTFDRTSIKK WLDNGLAVCP RTRQVLTHQE LIPNYTVKAM
301: IASWLEANRI NLATNSCHQY DGGDASSMAN NMGSQDFNRT ESFRFSLRSS SLTSRSSLET GNGFEKLKIN VSASLCGESQ SKDLEIFELL SPGQSYTHSR
401: SESVCSVVSS VDYVPSVTHE TESILGNHQS SSEMSPKKNL ESSNNVNHEH SAAKTYECSV HDLDDSGTMT TSHTIKLVED LKSGSNKVKT AAAAEIRHLT
501: INSIENRVHI GRCGAITPLL SLLYSEEKLT QEHAVTALLN LSISELNKAM IVEVGAIEPL VHVLNTGNDR AKENSAASLF SLSVLQVNRE RIGQSNAAIQ
601: ALVNLLGKGT FRGKKDAASA LFNLSITHDN KARIVQAKAV KYLVELLDPD LEMVDKAVAL LANLSAVGEG RQAIVREGGI PLLVETVDLG SQRGKENAAS
701: VLLQLCLNSP KFCTLVLQEG AIPPLVALSQ SGTQRAKEKA QQLLSHFRNQ RDARMKKGRS

Arabidopsis Description

PUB3U-box domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWV5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.