CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007097.1-P	Field mustard	cytosol	98.29	98.29
CDX73449	Canola	cytosol	93.45	93.18
CDY02891	Canola	cytosol	87.61	83.45
CDY64696	Canola	cytosol, extracellular, mitochondrion, plastid	86.61	82.38
AT3G54790.1	Thale cress	cytosol	86.47	79.87
VIT_07s0005g03520.t01	Wine grape	cytosol	57.98	51.72
CDY28679	Canola	cytosol	17.95	47.91
GSMUA_Achr6P36530_001	Banana	cytosol	44.02	46.82
KRG95672	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	53.85	46.44
PGSC0003DMT400026700	Potato	cytosol	50.43	45.5
Solyc09g025270.2.1	Tomato	cytosol	48.29	45.26
GSMUA_Achr5P21360_001	Banana	cytosol	47.01	43.48
KRH67390	Soybean	cytosol, plastid	52.99	43.46
CDX74298	Canola	plastid	20.51	40.68
CDY32692	Canola	peroxisome	20.37	40.51
CDX91947	Canola	plastid	20.37	40.51
CDY18649	Canola	cytosol, plastid	40.6	40.03
CDY02828	Canola	cytosol	20.09	39.83
CDX81323	Canola	cytosol, plastid	40.74	39.56
KRH32190	Soybean	cytosol	37.04	39.22
CDX76873	Canola	cytosol, plastid	40.6	38.15
CDY57440	Canola	cytosol	34.62	36.87
CDY12838	Canola	cytosol	36.61	36.77
CDX90518	Canola	plastid	21.37	32.97
CDX78273	Canola	cytosol	29.63	32.81
CDY09688	Canola	cytosol	20.94	32.38
CDY31736	Canola	cytosol	28.92	31.62
CDX74050	Canola	cytosol	20.37	31.36
CDY71737	Canola	cytosol	20.51	31.17
CDY28059	Canola	cytosol	20.51	31.17
CDX68379	Canola	cytosol	29.06	31.0
CDY25764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	25.93	30.95
CDY38931	Canola	cytosol	27.07	30.89
CDX99112	Canola	cytosol	28.77	30.84
CDX86080	Canola	cytosol	28.63	30.64
CDY08002	Canola	cytosol	19.8	30.55
CDX77213	Canola	cytosol	27.92	30.48
CDY12497	Canola	cytosol	25.78	30.32
CDX68380	Canola	cytosol	22.65	29.89
CDY21412	Canola	cytosol, endoplasmic reticulum	25.78	29.77
CDY04746	Canola	cytosol, endoplasmic reticulum	25.78	29.72
CDX95193	Canola	cytosol	27.64	29.62
CDY68037	Canola	cytosol	27.49	29.47
CDX96295	Canola	cytosol, plasma membrane	25.78	29.38
CDX72769	Canola	cytosol	25.36	29.09
CDY68352	Canola	cytosol	18.66	28.73
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	40.74	27.69
CDY38506	Canola	cytosol	17.81	27.41
CDY04747	Canola	cytosol, golgi	15.67	24.94
CDY48332	Canola	mitochondrion, plastid	24.07	24.01
CDX90186	Canola	mitochondrion	23.79	23.42
CDX94661	Canola	plastid	23.65	23.35
CDY43332	Canola	mitochondrion	23.79	23.23
CDX99816	Canola	plastid	23.93	23.2
CDY43686	Canola	plastid	21.79	23.15
CDY37666	Canola	cytosol, plastid	21.79	23.15
CDX70810	Canola	cytosol	15.53	23.09
CDX73439	Canola	plastid	29.63	23.09
CDY31406	Canola	cytosol	21.23	22.11
CDX71307	Canola	cytosol	21.08	21.99
CDY51235	Canola	extracellular, golgi	15.67	21.19
CDY55050	Canola	cytosol	20.23	20.4
CDY24520	Canola	cytosol	19.37	20.18
CDX93411	Canola	mitochondrion	19.8	19.91
CDY54132	Canola	cytosol	18.95	19.56
CDY04344	Canola	cytosol	7.69	16.93
CDY04342	Canola	cytosol	7.55	15.92
CDX70805	Canola	cytosol	16.1	7.33
CDY51234	Canola	cytosol	16.52	7.0

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078CNB4	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	EnsemblPlants:CDX78262	ProteinID:CDX78262	ProteinID:CDX78262.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00129597001	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF119	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EE1604	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

BnaA09g34570D

Coordinates

chrLK031814:-:2049652..2052320

Molecular Weight (calculated)

77256.8 Da

IEP (calculated)

5.938

GRAVY (calculated)

-0.158

Length

702 amino acids

Sequence
(BLAST)

001: MDPVPVRCLL NSISRYLHLV ACQTIRYSPI QTRIGNVVHL LKLLKPFLVE VVDCKTPPDD DCLNSGCEDL DSVVNQAREF LEDWSPKLSK LFGVFHCELL
101: LEKVQTCSLE ITRILLQFSQ SSAVTLSLQG VERCMQEIEC VKQEKTLTEH MNNALQNQTD GNDDLDSIIQ MIGLVSNQDL LKESIAVEKE QMDQLIDLVS
201: CIREHMLKTE FLEVAKGIST PPYFRCPLST ELMLDPVIVA SGQTFDRTSI KKWLDNGLAV CPRTRQVLSH QELIPNYTVK AMIESWLEAN NITLAVNSGG
301: DDSSVANNMG SNDFNRTESF RFSLRSSSFT SRSSVEAGNG FEKVKINVPA SLSKELEIFE LSSQEQSYTH SRSESVCSVV SSVDYVPSVT SETQSLPVNH
401: QSYSEMSSGT MMTSHTIKLV EDLKNGSNKE KTDAAAEIRR LTINSVENRV HFGRCGAITP LLSLLYSEEK LTQEQAVTAL LNLSLSEVNK GMIVEAGAIE
501: PLVHVLKAGN DRAKENSAAT LFSLSVVQVN RERIGQCNAA IHALVSLLGK GTLRGKKDAA SALFNLSITH ENKARIVQAK AVKYLVEMLD PDLEMVDKAV
601: ALLANLSGVG EGRQEIVREG GVPLLVETVD SGSGRGKENA ASVLLQLCLN SPKFCTLVLQ EGAIPPLVAL SQSGTQRAKE KAQQLLSHFR NQRDARMKKG
701: RS

Best Arabidopsis Sequence Match ( AT3G54790.3 )
(BLAST)

001: MDPVPVRCLL NSISRYLHLV ACQTIRFNPI QTCIGNMVLL LKLLKPLLDE VVDCKIPSDD CLYKGCEDLD SVVNQAREFL EDWSPKLSKL FGVFQCEVLL
101: GKVQTCSLEI SRILLQLSQS SPVTSSVQSV ERCVQETESF KQEGTLMELM ENALRNQKDD ITSLDNNHLE SIIQMLGLIS NQDLLKESIT VEKERIRSQA
201: SKSEEDMEQT EQLIELVLCI REHMLKTEFL EVAKGISIPP YFRCPLSTEL MLDPVIVASG QTFDRTSIKK WLDNGLAVCP RTRQVLTHQE LIPNYTVKAM
301: IASWLEANRI NLATNSCHQY DGGDASSMAN NMGSQDFNRT ESFRFSLRSS SLTSRSSLET GNGFEKLKIN VSASLCGESQ SKDLEIFELL SPGQSYTHSR
401: SESVCSVVSS VDYVPSVTHE TESILGNHQS SSEMSPKKNL ESSNNVNHEH SAAKTYECSV HDLDDSGTMT TSHTIKLVED LKSGSNKVKT AAAAEIRHLT
501: INSIENRVHI GRCGAITPLL SLLYSEEKLT QEHAVTALLN LSISELNKAM IVEVGAIEPL VHVLNTGNDR AKENSAASLF SLSVLQVNRE RIGQSNAAIQ
601: ALVNLLGKGT FRGKKDAASA LFNLSITHDN KARIVQAKAV KYLVELLDPD LEMVDKAVAL LANLSAVGEG RQAIVREGGI PLLVETVDLG SQRGKENAAS
701: VLLQLCLNSP KFCTLVLQEG AIPPLVALSQ SGTQRAKEKA QQLLSHFRNQ RDARMKKGRS

Arabidopsis Description

PUB3U-box domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWV5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.