Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G71020.1 | CDX72718 | AT4G39050.1 | 21798944 |
| AT1G71020.1 | CDX90305 | AT4G39050.1 | 21798944 |
| AT1G71020.1 | CDY12116 | AT4G39050.1 | 21798944 |
| AT1G71020.1 | CDY22394 | AT4G39050.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96295 | Canola | cytosol, plasma membrane | 96.9 | 96.27 |
| AT1G71020.1 | Thale cress | cytosol | 82.52 | 80.41 |
| CDY04746 | Canola | cytosol, endoplasmic reticulum | 75.65 | 76.03 |
| CDY21412 | Canola | cytosol, endoplasmic reticulum | 75.33 | 75.82 |
| CDY25764 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 72.06 | 75.0 |
| CDY04747 | Canola | cytosol, golgi | 53.92 | 74.83 |
| CDY12497 | Canola | cytosol | 72.71 | 74.54 |
| VIT_01s0011g04770.t01 | Wine grape | cytosol | 59.97 | 57.43 |
| KRH50347 | Soybean | nucleus | 60.29 | 56.42 |
| KRG89279 | Soybean | cytosol | 59.64 | 56.07 |
| PGSC0003DMT400015349 | Potato | cytosol | 57.68 | 54.56 |
| Solyc04g007640.2.1 | Tomato | cytosol | 57.19 | 54.1 |
| PGSC0003DMT400078473 | Potato | cytosol | 55.39 | 52.15 |
| Solyc05g008230.2.1 | Tomato | cytosol | 55.23 | 52.0 |
| Zm00001d000381_P001 | Maize | cytosol | 49.51 | 47.49 |
| EES07310 | Sorghum | cytosol | 49.18 | 47.18 |
| TraesCS6A01G293600.1 | Wheat | cytosol | 49.35 | 47.11 |
| TraesCS6B01G324000.1 | Wheat | cytosol | 49.35 | 46.97 |
| TraesCS6D01G274500.1 | Wheat | cytosol | 49.18 | 46.96 |
| Os02t0732200-01 | Rice | cytosol | 48.53 | 46.62 |
| CDY28679 | Canola | cytosol | 19.61 | 45.63 |
| GSMUA_Achr9P15600_001 | Banana | cytosol | 44.77 | 40.53 |
| CDX86080 | Canola | cytosol | 42.16 | 39.33 |
| CDX68380 | Canola | cytosol | 34.15 | 39.29 |
| CDX99112 | Canola | cytosol | 41.83 | 39.08 |
| CDX68379 | Canola | cytosol | 41.67 | 38.75 |
| CDX78273 | Canola | cytosol | 39.71 | 38.33 |
| CDY31736 | Canola | cytosol | 39.87 | 38.01 |
| CDX77213 | Canola | cytosol | 39.54 | 37.64 |
| HORVU6Hr1G073280.1 | Barley | cytosol | 49.02 | 37.36 |
| CDY32692 | Canola | peroxisome | 20.42 | 35.41 |
| CDY02828 | Canola | cytosol | 20.26 | 35.03 |
| CDX91947 | Canola | plastid | 19.93 | 34.56 |
| CDY71737 | Canola | cytosol | 25.82 | 34.2 |
| CDY28059 | Canola | cytosol | 25.82 | 34.2 |
| CDX74298 | Canola | plastid | 19.77 | 34.18 |
| CDX74050 | Canola | cytosol | 24.84 | 33.33 |
| CDY08002 | Canola | cytosol | 24.02 | 32.31 |
| CDY68037 | Canola | cytosol | 34.15 | 31.91 |
| CDX95193 | Canola | cytosol | 33.66 | 31.45 |
| CDY68352 | Canola | cytosol | 20.91 | 28.07 |
| CDX94661 | Canola | plastid | 32.03 | 27.57 |
| CDY43686 | Canola | plastid | 29.74 | 27.53 |
| CDY38506 | Canola | cytosol | 20.42 | 27.41 |
| CDY37666 | Canola | cytosol, plastid | 29.58 | 27.38 |
| CDX90186 | Canola | mitochondrion | 31.7 | 27.21 |
| CDY48332 | Canola | mitochondrion, plastid | 31.21 | 27.13 |
| CDX90518 | Canola | plastid | 20.1 | 27.03 |
| CDX73439 | Canola | plastid | 39.54 | 26.86 |
| CDY18649 | Canola | cytosol, plastid | 31.21 | 26.83 |
| CDY43332 | Canola | mitochondrion | 31.37 | 26.7 |
| CDX99816 | Canola | plastid | 31.54 | 26.66 |
| CDX81323 | Canola | cytosol, plastid | 31.21 | 26.42 |
| CDY09688 | Canola | cytosol | 19.44 | 26.21 |
| CDX73449 | Canola | cytosol | 29.58 | 25.71 |
| CDX78262 | Canola | cytosol | 29.09 | 25.36 |
| CDY57440 | Canola | cytosol | 26.96 | 25.04 |
| CDY12838 | Canola | cytosol | 28.59 | 25.04 |
| CDX76873 | Canola | cytosol, plastid | 30.56 | 25.03 |
| CDX71307 | Canola | cytosol | 26.96 | 24.52 |
| CDY31406 | Canola | cytosol | 26.96 | 24.48 |
| CDY02891 | Canola | cytosol | 28.76 | 23.88 |
| CDY64696 | Canola | cytosol, extracellular, mitochondrion, plastid | 28.76 | 23.85 |
| CDX70810 | Canola | cytosol | 17.32 | 22.46 |
| CDY38931 | Canola | cytosol | 22.39 | 22.28 |
| CDX93411 | Canola | mitochondrion | 24.84 | 21.78 |
| CDY55050 | Canola | cytosol | 24.51 | 21.55 |
| CDY24520 | Canola | cytosol | 23.2 | 21.07 |
| CDY54132 | Canola | cytosol | 23.04 | 20.74 |
| CDY51235 | Canola | extracellular, golgi | 17.32 | 20.42 |
| CDY46092 | Canola | endoplasmic reticulum, golgi, plasma membrane, plastid | 30.39 | 18.01 |
| CDY04344 | Canola | cytosol | 8.66 | 16.61 |
| CDY04342 | Canola | cytosol | 8.82 | 16.22 |
| CDX70805 | Canola | cytosol | 18.3 | 7.27 |
| CDY51234 | Canola | cytosol | 17.81 | 6.58 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078C9A0 | InterPro:ARM-like | InterPro:ARM-type_fold |
| InterPro:Armadillo | EnsemblPlants:CDX72769 | ProteinID:CDX72769 | ProteinID:CDX72769.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00103148001 | InterPro:IPR000225 |
| InterPro:IPR003613 | InterPro:IPR011989 | InterPro:IPR013083 | PFAM:PF00514 | PFAM:PF04564 | PFscan:PS50176 |
| PFscan:PS51698 | PANTHER:PTHR23315 | PANTHER:PTHR23315:SF52 | SMART:SM00185 | SMART:SM00504 | SUPFAM:SSF48371 |
| SUPFAM:SSF57850 | UniPathway:UPA00143 | UniParc:UPI0004EDBA84 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
BnaC06g32170D
Coordinates
chrLK031797:-:140394..143222
Molecular Weight (calculated)
67333.1 Da
IEP (calculated)
8.327
GRAVY (calculated)
-0.220
Length
612 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGVAVSPAS LLDVIAEIAE ISANTGVFKK DCADLARRVC LLTHLVEEIR DSPQTPTEEE SDASSSLVSC ECDWWSDLVV GLQAAKRLLS AATCFQARES
101: SEGAAKRISF QFQCVTWKLE KALGNLPYDR YDISDEVREH VELARLQLRR AMQRYGSLNS KKFSTALAEP MEKDSSSKVT EKLECIPETI HSNIPSSDEK
201: KLESPPRRKS SSASLAFFLS KDADIERLEK VITKTNDDNS KKSDNLTIPE DFLCPISLEL MKDPTYERSY IQRWIDCGNL RCPKTQQKLG NFALTPNYVL
301: RSLISQWCTK HNIEQPGGYT KNCEGEVSAI RALVRKLSTR SLQDRRTALS EIRSLSKRSS DNRILIAEAG AIPVLVKLLT SEDVETQEKA VTCVLNLSIY
401: ESNKELIMLA GAVTSIVQVL RAGTEEAKEN AAATLFSLSM ADENKIIIGA SGAIPALVNL LENGSVRGKK DAATALFNLC IYEGNKGRAV RAGVVNPLVK
501: MLSDTSSHRM VTEALTILSV LAGNKDAKTA ILRANAVPTL IALLQKDQPR NRENAAAILF AICKRDKEKL ILIGKLGAVV PLMELSRDGT ERAKRKANSL
601: LELLRNSSQK LC
101: SEGAAKRISF QFQCVTWKLE KALGNLPYDR YDISDEVREH VELARLQLRR AMQRYGSLNS KKFSTALAEP MEKDSSSKVT EKLECIPETI HSNIPSSDEK
201: KLESPPRRKS SSASLAFFLS KDADIERLEK VITKTNDDNS KKSDNLTIPE DFLCPISLEL MKDPTYERSY IQRWIDCGNL RCPKTQQKLG NFALTPNYVL
301: RSLISQWCTK HNIEQPGGYT KNCEGEVSAI RALVRKLSTR SLQDRRTALS EIRSLSKRSS DNRILIAEAG AIPVLVKLLT SEDVETQEKA VTCVLNLSIY
401: ESNKELIMLA GAVTSIVQVL RAGTEEAKEN AAATLFSLSM ADENKIIIGA SGAIPALVNL LENGSVRGKK DAATALFNLC IYEGNKGRAV RAGVVNPLVK
501: MLSDTSSHRM VTEALTILSV LAGNKDAKTA ILRANAVPTL IALLQKDQPR NRENAAAILF AICKRDKEKL ILIGKLGAVV PLMELSRDGT ERAKRKANSL
601: LELLRNSSQK LC
001: MAGGAITPDS LIGLIAEINE IPGNFGLFKK DCSDLARRVG LLTHLIEEIR DSSPPSESDA SSSLNSHECD WWSDLVVGLQ AAKRLLSSAT SFQARESSDG
101: AAKRISFQFQ CVTWKLEKAL GDLTYDRYDI SDEVREQVEL ARLQLRRAMQ RYGSLNSKKF SSGLSEPMEK DASSNRKVIE KLESIPETVH SLSDEKKFES
201: PPPWKSSSVS LAFFLSKDGD DERLEKAVTE NSDDSQKSDN LTIPEDFLCP ISLELMKDPA IVSTGQTYER SFIQRWIDCG NLSCPKTQQK LENFTLTPNY
301: VLRSLISQWC TKHNIEQPGG YMNGRTKNSD GSFRDLSGDM SAIRALVCKL SSQSIEDRRT AVSEIRSLSK RSTDNRILIA EAGAIPVLVK LLTSDGDTET
401: QENAVTCILN LSIYEHNKEL IMLAGAVTSI VLVLRAGSME ARENAAATLF SLSLADENKI IIGASGAIMA LVDLLQYGSV RGKKDAATAL FNLCIYQGNK
501: GRAVRAGIVK PLVKMLTDSS SERMADEALT ILSVLASNQV AKTAILRANA IPPLIDCLQK DQPRNRENAA AILLCLCKRD TEKLISIGRL GAVVPLMELS
601: RDGTERAKRK ANSLLELLRK SSRKLGSL
101: AAKRISFQFQ CVTWKLEKAL GDLTYDRYDI SDEVREQVEL ARLQLRRAMQ RYGSLNSKKF SSGLSEPMEK DASSNRKVIE KLESIPETVH SLSDEKKFES
201: PPPWKSSSVS LAFFLSKDGD DERLEKAVTE NSDDSQKSDN LTIPEDFLCP ISLELMKDPA IVSTGQTYER SFIQRWIDCG NLSCPKTQQK LENFTLTPNY
301: VLRSLISQWC TKHNIEQPGG YMNGRTKNSD GSFRDLSGDM SAIRALVCKL SSQSIEDRRT AVSEIRSLSK RSTDNRILIA EAGAIPVLVK LLTSDGDTET
401: QENAVTCILN LSIYEHNKEL IMLAGAVTSI VLVLRAGSME ARENAAATLF SLSLADENKI IIGASGAIMA LVDLLQYGSV RGKKDAATAL FNLCIYQGNK
501: GRAVRAGIVK PLVKMLTDSS SERMADEALT ILSVLASNQV AKTAILRANA IPPLIDCLQK DQPRNRENAA AILLCLCKRD TEKLISIGRL GAVVPLMELS
601: RDGTERAKRK ANSLLELLRK SSRKLGSL
Arabidopsis Description
PUB10RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WJE0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.