CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032309.1-P	Field mustard	plastid	98.86	98.86
CDX99816	Canola	plastid	94.32	91.71
CDX90186	Canola	mitochondrion	84.23	83.17
CDY43332	Canola	mitochondrion	84.52	82.75
AT1G29340.1	Thale cress	plastid	84.38	81.48
CDX94661	Canola	plastid	82.24	81.43
KRH21208	Soybean	mitochondrion	66.48	65.36
KRH11061	Soybean	mitochondrion, plastid	66.19	65.08
KRH59027	Soybean	mitochondrion	65.62	64.62
KRH42917	Soybean	mitochondrion	64.49	63.5
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	64.63	62.85
VIT_10s0003g01730.t01	Wine grape	mitochondrion	64.49	62.53
PGSC0003DMT400073254	Potato	cytosol	64.06	62.29
CDY43686	Canola	plastid	53.27	56.73
CDY37666	Canola	cytosol, plastid	53.12	56.58
GSMUA_Achr7P09440_001	Banana	mitochondrion	47.87	52.82
GSMUA_Achr2P15530_001	Banana	mitochondrion	49.15	52.42
TraesCS6B01G222200.1	Wheat	cytosol	30.4	51.07
GSMUA_Achr9P28820_001	Banana	mitochondrion	41.76	49.08
GSMUA_Achr10P...	Banana	mitochondrion	31.25	48.67
Os02t0234300-01	Rice	cytosol	38.21	46.3
Zm00001d053544_P001	Maize	mitochondrion, plastid	45.17	45.11
Zm00001d016225_P001	Maize	plastid	46.31	44.72
EES04812	Sorghum	plastid	45.88	44.31
TraesCS6D01G180400.1	Wheat	plastid	43.61	42.34
TraesCS6A01G190700.1	Wheat	plastid	43.61	42.34
HORVU6Hr1G041430.8	Barley	mitochondrion	43.89	37.5
CDX71307	Canola	cytosol	34.38	35.96
CDY31406	Canola	cytosol	34.38	35.91
CDY28679	Canola	cytosol	13.21	35.36
CDX78273	Canola	cytosol	30.54	33.91
CDY25764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	27.27	32.65
CDX68380	Canola	cytosol	24.57	32.52
CDY12497	Canola	cytosol	27.41	32.33
CDX68379	Canola	cytosol	29.83	31.91
CDX96295	Canola	cytosol, plasma membrane	27.84	31.82
CDY04746	Canola	cytosol, endoplasmic reticulum	27.27	31.53
CDY21412	Canola	cytosol, endoplasmic reticulum	27.13	31.41
CDX86080	Canola	cytosol	29.26	31.4
CDX72769	Canola	cytosol	27.13	31.21
CDX99112	Canola	cytosol	28.98	31.14
CDX77213	Canola	cytosol	27.7	30.33
CDX74298	Canola	plastid	15.2	30.23
CDX91947	Canola	plastid	15.06	30.03
CDY68037	Canola	cytosol	27.84	29.92
CDY31736	Canola	cytosol	27.27	29.91
CDX95193	Canola	cytosol	27.56	29.62
CDY04747	Canola	cytosol, golgi	18.47	29.48
CDY71737	Canola	cytosol	19.32	29.44
CDY32692	Canola	peroxisome	14.63	29.18
CDX74050	Canola	cytosol	18.89	29.17
CDY28059	Canola	cytosol	18.89	28.79
CDY08002	Canola	cytosol	18.47	28.57
CDY02828	Canola	cytosol	14.35	28.53
CDX76873	Canola	cytosol, plastid	28.84	27.18
CDY24520	Canola	cytosol	25.71	26.85
CDY54132	Canola	cytosol	25.85	26.76
CDY68352	Canola	cytosol	17.33	26.75
CDY38506	Canola	cytosol	17.33	26.75
CDY18649	Canola	cytosol, plastid	26.28	25.98
CDX81323	Canola	cytosol, plastid	25.99	25.31
CDX90518	Canola	plastid	16.34	25.27
CDY57440	Canola	cytosol	23.3	24.89
CDY55050	Canola	cytosol	24.43	24.71
CDY09688	Canola	cytosol	15.91	24.67
CDY12838	Canola	cytosol	24.43	24.61
CDX93411	Canola	mitochondrion	24.15	24.36
CDX73449	Canola	cytosol	24.15	24.15
CDY04344	Canola	cytosol	10.94	24.14
CDX78262	Canola	cytosol	24.01	24.07
CDX73439	Canola	plastid	30.4	23.75
CDY02891	Canola	cytosol	24.86	23.74
CDY04342	Canola	cytosol	11.22	23.72
CDY64696	Canola	cytosol, extracellular, mitochondrion, plastid	24.86	23.71
CDY38931	Canola	cytosol	19.74	22.6
CDX70810	Canola	cytosol	14.2	21.19
CDY46092	Canola	endoplasmic reticulum, golgi, plasma membrane, plastid	28.69	19.55
CDY51235	Canola	extracellular, golgi	14.2	19.27
CDX70805	Canola	cytosol	16.19	7.4
CDY51234	Canola	cytosol	15.48	6.58

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078IE71	UniProt:A0A078IE71	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	EnsemblPlants:CDY48332	ProteinID:CDY48332	ProteinID:CDY48332.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00089304001	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514
PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF76	SMART:SM00185	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EE8513	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

BnaA09g26890DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078IE71]

Coordinates

chrLK032766:+:66736..68850

Molecular Weight (calculated)

77036.5 Da

IEP (calculated)

6.525

GRAVY (calculated)

0.007

Length

704 amino acids

Sequence
(BLAST)

001: MATAAIFSSL RRRRSPSLEA FLAPVDLSGI ALVKTLASIS SEVVSSFAAT RFSFQRRNAR SLLRKIEIFV VLFEFLAETR SPSSSTTALL CLKEFYLLIY
101: RSKILLEYVA QSSKLWLLLQ NPSISGYFHD LNQEISTLLD VFPVNELNLS DDIREHIKLL QNQSLKSRLY IDNNDESLRE TFYSFLESFE NGEIPSPTAL
201: KTFFVERLAF KDSNSYRNEI EFLEEQIVNH DGDLEPASSV INGFVAIARY SRFLLFGFEE DGVEWRIENN HPKVGEDTIV TSVPKDFVCP ISLDLMTDPV
301: IVSTGQTYDR TSIARWIEEG HCTCPKTGQT LMDSRIVPNR ALKNLIVQWC TASGVAIESE FVTDSVVSAL PTKAAVEANK ATVSILVKFL ADGSSEAGQT
401: IAAREIRLLA KTGKDNRSFI AEAGAIPHLR RLLKSEKAIA QENSVTAMLN LSIYEKNKSL IMEEDDCLEC IVSVLLSGLT VEAQENAAAT LFSLSAVHEY
501: KKRIAFTDHC VEALSSLLRN GTPRGKKDAV TALYNLSTHP DNCGRMIQGG GVSSLVGALK NDVVSEEAAG ALALLVRQSL GAEAIGREEG AVTGLMGMMR
601: CGTARGKENA VAALLELCRS GGAAAAEKVL RVPAIAGLLQ TLLFTGTKRA RRKAASLARV FQRREHAAMR SGGYGFVGNV NENRDGGNFT TDVSVPMSIS
701: VPVL

Best Arabidopsis Sequence Match ( AT1G29340.1 )
(BLAST)

001: MASAAIFSSL RRRRSPSLEA FLAPVDLSGV ALVQTLASIS SEVVSCFTSV RFSFQRKNAR SLIRKIEIFV VLFEFLVDSN WGSTTTRTRA RRRSKSSVSE
101: STALLCLKEL YLLLYRSKIL VDYCAQSSKL WLLLQNPSIS GYFHDLNQEI STLLDVLPVN DLGLSDDIRE QIELLQRQSR KARLYIDKND ESLRESFYSF
201: LDGFENGKIP SSVDLRMFFV EKLGIRDSKS CRSEIEFLEE QIVNHDGDLE PTGSVINGFV AITRYCRFLL FGFEEDGMEW WIENNPKKPR KGFVAQEIGD
301: TFITVPKDFV CPISLDLMTD PVIISTGQTY DRNSIARWIE EGHCTCPKTG QMLMDSRIVP NRALKNLIVQ WCTASGISYE SEFTDSPNES FASALPTKAA
401: VEANKATVSI LIKYLADGSQ AAQTVAAREI RLLAKTGKEN RAYIAEAGAI PHLCRLLTSE NAIAQENSVT AMLNLSIYEK NKSRIMEEGD CLESIVSVLV
501: SGLTVEAQEN AAATLFSLSA VHEYKKRIAI VDQCVEALAL LLQNGTPRGK KDAVTALYNL STHPDNCSRM IEGGGVSSLV GALKNEGVAE EAAGALALLV
601: RQSLGAEAIG KEDSAVAGLM GMMRCGTPRG KENAVAALLE LCRSGGAAVA EKVLRAPAIA GLLQTLLFTG TKRARRKAAS LARVFQRREN AAMRSGVYGF
701: VGNTNGNRDG GFTTDVSVPI SISISVPVL

Arabidopsis Description

PUB17RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WA68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.