CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01631
EES09201
EES16322
OQU78227

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29340.1	EES01631	AT2G41100.1	17360592
AT1G29340.1	EES09201	AT2G41100.1	17360592
AT1G29340.1	EES16322	AT2G41100.1	17360592
AT1G29340.1	OQU78227	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016225_P001	Maize	plastid	94.92	94.92
Zm00001d053544_P001	Maize	mitochondrion, plastid	90.95	94.04
TraesCS6B01G222200.1	Wheat	cytosol	50.62	88.07
Os02t0234300-01	Rice	cytosol	67.35	84.51
TraesCS6D01G180400.1	Wheat	plastid	82.85	83.31
TraesCS6A01G190700.1	Wheat	plastid	82.72	83.17
HORVU6Hr1G041430.8	Barley	mitochondrion	82.58	73.06
GSMUA_Achr2P15530_001	Banana	mitochondrion	48.83	53.94
GSMUA_Achr7P09440_001	Banana	mitochondrion	46.36	52.98
GSMUA_Achr9P28820_001	Banana	mitochondrion	43.35	52.75
GSMUA_Achr10P...	Banana	mitochondrion	31.55	50.88
KRH11061	Soybean	mitochondrion, plastid	46.5	47.35
KRH21208	Soybean	mitochondrion	46.09	46.93
KRH42917	Soybean	mitochondrion	45.95	46.85
KRH59027	Soybean	mitochondrion	45.82	46.71
CDX90186	Canola	mitochondrion	45.68	46.7
CDY43332	Canola	mitochondrion	45.82	46.45
Bra010834.1-P	Field mustard	mitochondrion	45.68	46.31
Bra032309.1-P	Field mustard	plastid	44.44	46.02
AT1G29340.1	Thale cress	plastid	45.95	45.95
CDY48332	Canola	mitochondrion, plastid	44.31	45.88
VIT_10s0003g01730.t01	Wine grape	mitochondrion	45.4	45.59
CDX94661	Canola	plastid	44.44	45.57
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	44.99	45.3
PGSC0003DMT400073254	Potato	cytosol	44.86	45.17
CDX99816	Canola	plastid	44.72	45.03
CDY43686	Canola	plastid	38.0	41.91
Bra021899.1-P	Field mustard	plastid	38.0	41.91
CDY37666	Canola	cytosol, plastid	37.72	41.6
OQU78182	Sorghum	plastid	34.02	36.52
KXG33626	Sorghum	plastid	33.88	35.19
EER87680	Sorghum	cytosol	27.3	33.11
EES07310	Sorghum	cytosol	25.93	29.62
OQU79384	Sorghum	cytosol	27.02	29.58
EES06804	Sorghum	cytosol	18.52	29.09
EES15482	Sorghum	cytosol	25.24	28.62
OQU80426	Sorghum	endoplasmic reticulum, plasma membrane	27.85	28.43
KXG20946	Sorghum	cytosol	24.69	27.99
EER97464	Sorghum	cytosol	13.31	26.8
KXG35540	Sorghum	plasma membrane	26.2	26.68
OQU92820	Sorghum	cytosol	26.47	25.77
EER97453	Sorghum	plastid	15.36	23.93
EES01872	Sorghum	cytosol	22.5	20.37
EES14396	Sorghum	cytosol	23.18	16.78

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:8073819	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	UniProt:C5XYM3	EnsemblPlants:EES04812	ProteinID:EES04812	ProteinID:EES04812.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009605	GO:GO:0009607	GO:GO:0009814	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF76
SMART:SM00185	SMART:SM00504	EnsemblPlantsGene:SORBI_3004G103000	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0001A85931
InterPro:Ubox_domain	RefSeq:XP_002451836.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:9697392..9699581

Molecular Weight (calculated)

78832.4 Da

IEP (calculated)

8.317

GRAVY (calculated)

0.040

Length

729 amino acids

Sequence
(BLAST)

001: MAAPASSPVE FLLRRPQPRQ RRRPPLAGAF FAPTGLSGAP LLRALASLAA DVLATPPPPS QRRNLDALMR RLALLSALLD SLLLLLADEG EAAFSDAANL
101: CFRELYVVLF RADLLVSYVA SAGRTWALLR APQLAASFRD LDAELAVVLD VLPAASLRLS WDAAQYLDLL RARCRRRAPA HYNDPAEAAL GDRLLAALRH
201: FELGQPPDPS TLRSLLLQIG ISDAPSCRSE IEYLEEQILS QEEDADLPLI GGVVALLRYC LFSLFDPSNT KALRVWLSAG NRQRLLSWSC SDDSSFSVPK
301: EFSCPISLDL MRDPVVVSTG QTYDRPSIIQ WIDEGHSTCP NSGQALSDNR LVPNQALRSL ISQWCGVHGF QFDSPESNEG MIECVAASCS SKAAIEANKA
401: TARILVKTLM EGSDNAKPVA AREIRLLAKT GKQNRAFIAE LGAIPLLCRL LLSSDWMAQE NAVTALLNLS IYEPNKTRIM EQDNCLHLIV SVLKNGWTTE
501: AKENAAATLF SLSVVHDYKK KIMNEPGAVE ELASMLTKGT PRGKKDAVMA LFNLSTHPES SGRMLESSAV VALIESLRND TVSEEAAGAL ALLMKQATIV
601: HLVGSSETVI TSLVGLMRRG TPKGKENAVS ALYEICRRGG STLVQRVARI PGLNTVIQNI TLTGTKRAKK KASLIVKMCQ RSQMPSALAL GSTMTVVDHS
701: LVGNSTLRRA ASFGSGELSN PVSISVPVP

Best Arabidopsis Sequence Match ( AT1G29340.1 )
(BLAST)

001: MASAAIFSSL RRRRSPSLEA FLAPVDLSGV ALVQTLASIS SEVVSCFTSV RFSFQRKNAR SLIRKIEIFV VLFEFLVDSN WGSTTTRTRA RRRSKSSVSE
101: STALLCLKEL YLLLYRSKIL VDYCAQSSKL WLLLQNPSIS GYFHDLNQEI STLLDVLPVN DLGLSDDIRE QIELLQRQSR KARLYIDKND ESLRESFYSF
201: LDGFENGKIP SSVDLRMFFV EKLGIRDSKS CRSEIEFLEE QIVNHDGDLE PTGSVINGFV AITRYCRFLL FGFEEDGMEW WIENNPKKPR KGFVAQEIGD
301: TFITVPKDFV CPISLDLMTD PVIISTGQTY DRNSIARWIE EGHCTCPKTG QMLMDSRIVP NRALKNLIVQ WCTASGISYE SEFTDSPNES FASALPTKAA
401: VEANKATVSI LIKYLADGSQ AAQTVAAREI RLLAKTGKEN RAYIAEAGAI PHLCRLLTSE NAIAQENSVT AMLNLSIYEK NKSRIMEEGD CLESIVSVLV
501: SGLTVEAQEN AAATLFSLSA VHEYKKRIAI VDQCVEALAL LLQNGTPRGK KDAVTALYNL STHPDNCSRM IEGGGVSSLV GALKNEGVAE EAAGALALLV
601: RQSLGAEAIG KEDSAVAGLM GMMRCGTPRG KENAVAALLE LCRSGGAAVA EKVLRAPAIA GLLQTLLFTG TKRARRKAAS LARVFQRREN AAMRSGVYGF
701: VGNTNGNRDG GFTTDVSVPI SISISVPVL

Arabidopsis Description

PUB17RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WA68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.