Factsheet for Bra010834.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000214.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29340.1	Bra000214.1-P	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90186	Canola	mitochondrion	97.91	98.74
AT1G29340.1	Thale cress	plastid	86.65	85.46
Bra032309.1-P	Field mustard	plastid	82.48	84.23
KRH21208	Soybean	mitochondrion	69.26	69.55
KRH11061	Soybean	mitochondrion, plastid	69.12	69.41
KRH59027	Soybean	mitochondrion	68.01	68.39
KRH42917	Soybean	mitochondrion	66.9	67.27
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	66.2	65.75
PGSC0003DMT400073254	Potato	cytosol	66.06	65.61
VIT_10s0003g01730.t01	Wine grape	mitochondrion	65.51	64.88
Bra021899.1-P	Field mustard	plastid	55.91	60.82
GSMUA_Achr2P15530_001	Banana	mitochondrion	49.37	53.79
GSMUA_Achr7P09440_001	Banana	mitochondrion	47.29	53.29
TraesCS6B01G222200.1	Wheat	cytosol	30.46	52.27
GSMUA_Achr9P28820_001	Banana	mitochondrion	42.98	51.59
GSMUA_Achr10P...	Banana	mitochondrion	31.85	50.66
Os02t0234300-01	Rice	cytosol	38.94	48.19
Zm00001d053544_P001	Maize	mitochondrion, plastid	45.76	46.67
Zm00001d016225_P001	Maize	plastid	46.73	46.09
EES04812	Sorghum	plastid	46.31	45.68
TraesCS6A01G190700.1	Wheat	plastid	43.95	43.59
TraesCS6D01G180400.1	Wheat	plastid	43.95	43.59
HORVU6Hr1G041430.8	Barley	mitochondrion	43.95	38.35
Bra001998.1-P	Field mustard	cytosol	31.29	37.69
Bra019022.1-P	Field mustard	cytosol	34.63	36.94
Bra007105.1-P	Field mustard	cytosol	31.02	35.17
Bra040513.1-P	Field mustard	cytosol	12.8	34.98
Bra018212.1-P	Field mustard	cytosol	30.46	33.64
Bra012355.1-P	Field mustard	plasma membrane	27.4	33.5
Bra033820.1-P	Field mustard	cytosol	30.6	33.43
Bra024559.1-P	Field mustard	cytosol, plasma membrane	27.4	32.35
Bra016165.1-P	Field mustard	cytosol, plasma membrane	27.54	32.14
Bra035665.1-P	Field mustard	cytosol	28.65	31.6
Bra027977.1-P	Field mustard	cytosol	27.26	30.06
Bra001247.1-P	Field mustard	cytosol	18.5	29.17
Bra001006.1-P	Field mustard	plastid	14.33	29.1
Bra020360.1-P	Field mustard	cytosol	14.05	28.61
Bra040374.1-P	Field mustard	cytosol	17.94	28.6
Bra029642.1-P	Field mustard	cytosol	18.36	28.57
Bra031521.1-P	Field mustard	cytosol	25.59	27.18
Bra037117.1-P	Field mustard	cytosol, plastid	26.43	25.89
Bra019924.1-P	Field mustard	mitochondrion	24.48	25.32
Bra012713.1-P	Field mustard	cytosol	15.99	25.27
Bra038470.1-P	Field mustard	plastid	16.41	25.21
Bra012155.1-P	Field mustard	cytosol	22.67	24.73
Bra007097.1-P	Field mustard	cytosol	22.95	23.5
Bra032180.1-P	Field mustard	cytosol	19.05	23.46
Bra014787.1-P	Field mustard	cytosol	23.37	22.76
Bra006451.1-P	Field mustard	cytosol	14.46	22.27
Bra002153.1-P	Field mustard	cytosol	17.52	9.22
Bra006452.1-P	Field mustard	cytosol	15.72	6.8

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
EnsemblPlantsGene:Bra010834	EnsemblPlants:Bra010834.1	EnsemblPlants:Bra010834.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:M4D2Y1	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698
PANTHER:PTHR23315	PANTHER:PTHR23315:SF76	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI00025454AB	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

AT1G29340 (E=9e-261) PUB17, ATPUB17 | PUB17 (PLANT U-BOX 17); ubiquitin-protein ligase

Coordinates

chrA08:-:16700416..16702575

Molecular Weight (calculated)

78608.1 Da

IEP (calculated)

7.140

GRAVY (calculated)

-0.099

Length

719 amino acids

Sequence
(BLAST)

001: MATAAIFSSL RRRRSPSLEA FLSPVDLSGL PLVQTLAAIS TEIISSFSGT RFSFQRRNAR SLIRKIEIFL VLFESLAESR WGSTPSSSSS SSSTALLCLK
101: ELYLLLYRSK ILLDYGAHSS KLWLLLQTQS ISGYFHDLNQ EISTLLDVFP VNDLSLSDDV REQIELLQSQ SRRSRLYIDS NDESLRRTFY SFLDGFENGE
201: IPNSIALRSF FAEKLQIKDS KSCGNEIEFL EEQIANHDGD VEPTGSVING FVAITRYCRF LLFGFEEEWR IKNNNPKKKK SKRDGNDGFI TVPKDFVCPI
301: SLDLMSDPVI ISTGQTYDRT SIARWIEEGH CTCPKTGQML VDSRIVPNRA LKNLIVQWCA ASGVSYESEF ITDSQTNEGF VSGLPTKAAV EANKATVSIL
401: IEYLADGSEA AQTVAAREIR LLAKTGKENR EFIAEAGAIP HLRRLLKSEN AVAQENSVTA MLNLSIYEKN KSRIMEEDDC LEAIVSVLVS GLTVEAQENA
501: AATLFSLSAV HEYKKRIAMA DQCVEALASL LQNGTPRGKK DAVTALYNLS THPENCSRMI EGGGVSSLVG ALKNEGVAEE AAGALALLVR QSLGAEAIGK
601: EESAVTGLMG MMRCGRPRGK ENAVAALLEL CRRGGAAVAE RVLRAPAIAG VLQTLLFTGT KRARRKAASL ARVFQRREHA AMRAGGYGFV GDVNGNRDGG
701: NFTTDVSVPM SISISVPVL

Best Arabidopsis Sequence Match ( AT1G29340.1 )
(BLAST)

001: MASAAIFSSL RRRRSPSLEA FLAPVDLSGV ALVQTLASIS SEVVSCFTSV RFSFQRKNAR SLIRKIEIFV VLFEFLVDSN WGSTTTRTRA RRRSKSSVSE
101: STALLCLKEL YLLLYRSKIL VDYCAQSSKL WLLLQNPSIS GYFHDLNQEI STLLDVLPVN DLGLSDDIRE QIELLQRQSR KARLYIDKND ESLRESFYSF
201: LDGFENGKIP SSVDLRMFFV EKLGIRDSKS CRSEIEFLEE QIVNHDGDLE PTGSVINGFV AITRYCRFLL FGFEEDGMEW WIENNPKKPR KGFVAQEIGD
301: TFITVPKDFV CPISLDLMTD PVIISTGQTY DRNSIARWIE EGHCTCPKTG QMLMDSRIVP NRALKNLIVQ WCTASGISYE SEFTDSPNES FASALPTKAA
401: VEANKATVSI LIKYLADGSQ AAQTVAAREI RLLAKTGKEN RAYIAEAGAI PHLCRLLTSE NAIAQENSVT AMLNLSIYEK NKSRIMEEGD CLESIVSVLV
501: SGLTVEAQEN AAATLFSLSA VHEYKKRIAI VDQCVEALAL LLQNGTPRGK KDAVTALYNL STHPDNCSRM IEGGGVSSLV GALKNEGVAE EAAGALALLV
601: RQSLGAEAIG KEDSAVAGLM GMMRCGTPRG KENAVAALLE LCRSGGAAVA EKVLRAPAIA GLLQTLLFTG TKRARRKAAS LARVFQRREN AAMRSGVYGF
701: VGNTNGNRDG GFTTDVSVPI SISISVPVL

Arabidopsis Description

PUB17RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WA68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.