Factsheet for Bra001998.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019022.1-P	Field mustard	cytosol	99.83	88.43
CDY31406	Canola	cytosol	99.5	88.13
CDX71307	Canola	cytosol	98.66	87.52
AT5G01830.1	Thale cress	plastid	84.25	74.63
VIT_08s0058g01100.t01	Wine grape	plastid	58.96	51.99
Solyc09g018230.1.1	Tomato	plastid	57.79	50.15
PGSC0003DMT400071349	Potato	plastid	58.12	50.14
GSMUA_Achr8P25140_001	Banana	plastid	34.0	48.33
KRH76105	Soybean	cytosol, plastid	55.44	47.15
KRH65448	Soybean	plastid	36.52	44.67
Zm00001d012494_P001	Maize	cytosol	44.89	40.42
Zm00001d043043_P001	Maize	cytosol	44.05	39.67
Zm00001d038471_P001	Maize	cytosol, plasma membrane, plastid	44.39	39.55
TraesCS1A01G300000.1	Wheat	cytosol	44.22	39.52
OQU78182	Sorghum	plastid	44.72	39.32
TraesCS1D01G299400.1	Wheat	cytosol, plastid	43.38	38.83
HORVU1Hr1G069990.1	Barley	plastid	44.22	38.71
GSMUA_Achr7P22130_001	Banana	cytosol	41.04	38.7
Os05t0476700-01	Rice	plastid	43.89	38.7
TraesCS3A01G345800.1	Wheat	plastid	44.22	38.65
GSMUA_Achr4P00200_001	Banana	plastid	45.39	38.49
TraesCS1B01G310100.1	Wheat	plastid	43.38	38.43
Os01t0823900-01	Rice	plastid	43.72	38.38
HORVU3Hr1G081300.1	Barley	plastid	44.22	38.37
TraesCS3B01G377600.1	Wheat	plastid	44.05	38.28
TraesCS3D01G339600.1	Wheat	plastid	44.05	38.17
KXG33626	Sorghum	plastid	44.05	37.46
Bra032309.1-P	Field mustard	plastid	37.02	31.39
Bra010834.1-P	Field mustard	mitochondrion	37.69	31.29
Bra040513.1-P	Field mustard	cytosol	13.74	31.18
Bra021899.1-P	Field mustard	plastid	30.65	27.69
Bra007105.1-P	Field mustard	cytosol	28.48	26.81
Bra012355.1-P	Field mustard	plasma membrane	25.96	26.36
Bra035665.1-P	Field mustard	cytosol	28.64	26.23
Bra016165.1-P	Field mustard	cytosol, plasma membrane	26.63	25.81
Bra024559.1-P	Field mustard	cytosol, plasma membrane	26.3	25.78
Bra027977.1-P	Field mustard	cytosol	27.97	25.61
Bra040374.1-P	Field mustard	cytosol	19.26	25.5
Bra001247.1-P	Field mustard	cytosol	19.26	25.22
Bra018212.1-P	Field mustard	cytosol	27.47	25.19
Bra029642.1-P	Field mustard	cytosol	19.26	24.89
Bra033820.1-P	Field mustard	cytosol	27.14	24.62
Bra031521.1-P	Field mustard	cytosol	27.47	24.22
Bra020360.1-P	Field mustard	cytosol	13.9	23.51
Bra001006.1-P	Field mustard	plastid	13.74	23.16
Bra037117.1-P	Field mustard	cytosol, plastid	26.8	21.8
Bra012713.1-P	Field mustard	cytosol	16.58	21.76
Bra012155.1-P	Field mustard	cytosol	23.79	21.55
Bra038470.1-P	Field mustard	plastid	16.75	21.37
Bra032180.1-P	Field mustard	cytosol	20.44	20.89
Bra014787.1-P	Field mustard	cytosol	24.96	20.19
Bra019924.1-P	Field mustard	mitochondrion	23.28	20.0
Bra007097.1-P	Field mustard	cytosol	23.45	19.94
Bra006451.1-P	Field mustard	cytosol	15.58	19.91
Bra002153.1-P	Field mustard	cytosol	18.09	7.91
Bra006452.1-P	Field mustard	cytosol	16.08	5.78

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
EnsemblPlantsGene:Bra001998	EnsemblPlants:Bra001998.1	EnsemblPlants:Bra001998.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	UniProt:M4CCR7	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF63	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI00025442D8	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

AT5G01830 (E=9e-270) | armadillo/beta-catenin repeat family protein / U-box domain-containing protein

Coordinates

chrA10:+:12377577..12379370

Molecular Weight (calculated)

65393.0 Da

IEP (calculated)

5.464

GRAVY (calculated)

0.003

Length

597 amino acids

Sequence
(BLAST)

001: MVYSQSAQLC FEEMNIVMQR MKTLIEDCTR SSKLWLLLQI ENVSFSFHEL VADLSTVLDI LPVNDFNLSE DAEDLILLLK KQCSDSIQFV DPRDDDLRRK
101: VTDTIDGIKH QIVPDQSKLI GIFNDLGLLD SASLIEEIQR LEDETHDQID ERSRIAAASL IGLVRYANCV LYGPSTPSPH PDFRRHKSLS EANIPADFRC
201: PITLELMRDP VVVSMGQTYD RESIDLWIKS GHNTCPKTGQ VLKHTNLIPN SALKNLIVMW CRDQKIPFEI YGDGGVGSST PCTEAVEFTR MMVSFLIDKL
301: ISVAEPNAVV FALRALAKSD SVARACIAEA GAIPKLVRYL GSDSPSLQIN AVTAILNLSI LEQNKTRIME TDGALNGVIE VLRSGATWEA KANAAATLFS
401: LASISTYKRR LGRKVRVVSG LVDLAKQGPT SSKRDAFVAI LNLAAERENV GRFVEAGVVQ AAGDAFRELP EEAVSVVEAI VRKGGLMAVS AAFGLIRQLG
501: EMMREGGDTT KESAAATLVT MCRKGGSELV AEMATIPGIE RVIWEMIGTG TARGGRKAAS LMRYLRRWAA GDTYETAATE TQSIVVPTPS RIFNPVL

Best Arabidopsis Sequence Match ( AT5G01830.1 )
(BLAST)

001: MAVTLDSPSP ARKRRPLVVG SFESPKLSSD TKLTRSLFLA SHEISSMQPL PFILRRNSLS LIRKVKILAS VFDELLLPRS QLVVYSQSAH LCFEEMQIVM
101: QRIKSLIDDC SRVSKLWLLL QIDIVAFNFH ELVTDLSTVL DILPLHDFDL SDDAQDLISL LTKQCSDSVQ FVDARDVALR RKVTDTIAGI KHQISPDHST
201: LIKIFNDLGL SDSASLTDEI QRLEDEIQDQ IDDRSKSAAA SLIGLVRYSK CVLYGPSTPA PDFRRHQSLS DANIPADFRC PITLELMRDP VVVATGQTYD
301: RESIDLWIQS GHNTCPKTGQ VLKHTSLVPN RALKNLIVLW CRDQKIPFEL YGDGGGEPAP CKEAVEFTKM MVSFLIEKLS VADSNGVVFE LRALAKSDTV
401: ARACIAEAGA IPKLVRYLAT ECPSLQINAV TTILNLSILE QNKTRIMETD GALNGVIEVL RSGATWEAKA NAAATLFSLA GVSAYRRRLG RKARVVSGLV
501: DLAKQGPTSS KRDALVAILN LVAERENVGR FVEAGVMGAA GDAFQELPEE AVAVVEAVVR RGGLMAVSAA FSLIRLLGEV MREGADTTRE SAAATLVTMC
601: RKGGSELVAE MAAIPGIERV IWEMIGAGTA RGGRKAASLM RYLRRWAAGD THNTAAETQS IVVPTPSRIF SPVL

Arabidopsis Description

PUB16RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178UNI7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.