Factsheet for Bra016165.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane

Predictor Summary:

nucleus 2
cytosol 2
extracellular 2
golgi 2
plasma membrane 3
endoplasmic reticulum 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010714.1-P
Bra033597.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71020.1	Bra010714.1-P	AT4G39050.1	21798944
AT1G71020.1	Bra033597.1-P	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96295	Canola	cytosol, plasma membrane	99.51	99.51
AT1G71020.1	Thale cress	cytosol	83.93	82.32
Bra024559.1-P	Field mustard	cytosol, plasma membrane	76.46	77.34
Bra012355.1-P	Field mustard	plasma membrane	73.7	77.21
VIT_01s0011g04770.t01	Wine grape	cytosol	60.71	58.53
KRH50347	Soybean	nucleus	61.36	57.8
KRG89279	Soybean	cytosol	60.71	57.45
PGSC0003DMT400015349	Potato	cytosol	58.77	55.95
Solyc04g007640.2.1	Tomato	cytosol	58.44	55.64
PGSC0003DMT400078473	Potato	cytosol	56.17	53.23
Solyc05g008230.2.1	Tomato	cytosol	56.01	53.08
Zm00001d000381_P001	Maize	cytosol	50.49	48.75
EES07310	Sorghum	cytosol	50.16	48.43
TraesCS6A01G293600.1	Wheat	cytosol	50.32	48.36
TraesCS6D01G274500.1	Wheat	cytosol	50.32	48.36
TraesCS6B01G324000.1	Wheat	cytosol	50.32	48.21
Os02t0732200-01	Rice	cytosol	49.35	47.72
Bra040513.1-P	Field mustard	cytosol	19.48	45.63
GSMUA_Achr9P15600_001	Banana	cytosol	46.1	42.01
Bra018212.1-P	Field mustard	cytosol	42.37	40.09
Bra007105.1-P	Field mustard	cytosol	41.23	40.06
Bra033820.1-P	Field mustard	cytosol	42.21	39.51
HORVU6Hr1G073280.1	Barley	cytosol	50.16	38.48
Bra035665.1-P	Field mustard	cytosol	40.58	38.34
Bra020360.1-P	Field mustard	cytosol	20.13	35.13
Bra029642.1-P	Field mustard	cytosol	25.97	34.63
Bra001247.1-P	Field mustard	cytosol	25.32	34.21
Bra001006.1-P	Field mustard	plastid	19.48	33.9
Bra040374.1-P	Field mustard	cytosol	24.03	32.82
Bra027977.1-P	Field mustard	cytosol	34.58	32.67
Bra021899.1-P	Field mustard	plastid	30.03	27.99
Bra032309.1-P	Field mustard	plastid	31.82	27.84
Bra010834.1-P	Field mustard	mitochondrion	32.14	27.54
Bra012713.1-P	Field mustard	cytosol	19.97	27.03
Bra037117.1-P	Field mustard	cytosol, plastid	31.82	26.7
Bra001998.1-P	Field mustard	cytosol	25.81	26.63
Bra038470.1-P	Field mustard	plastid	20.13	26.5
Bra007097.1-P	Field mustard	cytosol	29.55	25.93
Bra012155.1-P	Field mustard	cytosol	27.27	25.49
Bra019022.1-P	Field mustard	cytosol	27.6	25.22
Bra014787.1-P	Field mustard	cytosol	29.55	24.66
Bra032180.1-P	Field mustard	cytosol	22.89	24.14
Bra006451.1-P	Field mustard	cytosol	17.53	23.13
Bra019924.1-P	Field mustard	mitochondrion	25.16	22.3
Bra031521.1-P	Field mustard	cytosol	23.86	21.71
Bra002153.1-P	Field mustard	cytosol	21.75	9.81
Bra006452.1-P	Field mustard	cytosol	17.86	6.62

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
EnsemblPlantsGene:Bra016165	EnsemblPlants:Bra016165.1	EnsemblPlants:Bra016165.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031648	GO:GO:0043621
GO:GO:0051865	GO:GO:2000022	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
UniProt:M4DI38	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF52	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000254132F
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

AT1G71020 (E=2e-250) | armadillo/beta-catenin repeat family protein / U-box domain-containing protein

Coordinates

chrA07:-:19096085..19098941

Molecular Weight (calculated)

67823.8 Da

IEP (calculated)

8.470

GRAVY (calculated)

-0.232

Length

616 amino acids

Sequence
(BLAST)

001: MAGVAVSPAS LLDVIAEIAE ISANTGVFKK DCADLARRVC LLTHLVEEIR DSPQTPTAEE SDASSSCECD WWSDLVVGLQ AAKRLLSAAT CFQARESSEG
101: AAKRISFQFQ CVTWKLEKAL GNLPYDRYDI SDEVREHVEL ARLQLRRAMQ RYGSLNSKKF STALSEPMEK DASRKVTEKL ECIPETIHSN IPSSDEKKLE
201: SPPRRKSSSV SLAFFLSKDA DNERLEKAIT KTNDDDSKKS DNLTIPEDFL CPISLELMKD PVIVSTGQTY ERSYIQRWID CGNLRCPKTQ QKLGNFALTP
301: NYVLRSLISQ WCTKHNIEQP GGYTKNCEGD MSKIRALVRK LSTRSLQDRR TALSEIRSLS KRSSDNRILI AEAGAIPILV KLLTSEDVET QEKAVTCVLN
401: LSIYESNKEL IMLAGAVTSI VQVLRAGTEE AKENAAATLF SLSLADENKI IIGASGAIPA LVNLLENGSV RGKKDAATAL FNLCIYEGNK GRAVRAGVVN
501: PLVKMLSDTS SHRMVTEALT ILSVLAGNQD AKTAMLRANA IPCLIALLQK DQPRNRENAA AILFAICKRD KEKLILIGKL GAVVPLMELS RDGTERAKRK
601: ASSLLELLRK SSQKLC

Best Arabidopsis Sequence Match ( AT1G71020.1 )
(BLAST)

001: MAGGAITPDS LIGLIAEINE IPGNFGLFKK DCSDLARRVG LLTHLIEEIR DSSPPSESDA SSSLNSHECD WWSDLVVGLQ AAKRLLSSAT SFQARESSDG
101: AAKRISFQFQ CVTWKLEKAL GDLTYDRYDI SDEVREQVEL ARLQLRRAMQ RYGSLNSKKF SSGLSEPMEK DASSNRKVIE KLESIPETVH SLSDEKKFES
201: PPPWKSSSVS LAFFLSKDGD DERLEKAVTE NSDDSQKSDN LTIPEDFLCP ISLELMKDPA IVSTGQTYER SFIQRWIDCG NLSCPKTQQK LENFTLTPNY
301: VLRSLISQWC TKHNIEQPGG YMNGRTKNSD GSFRDLSGDM SAIRALVCKL SSQSIEDRRT AVSEIRSLSK RSTDNRILIA EAGAIPVLVK LLTSDGDTET
401: QENAVTCILN LSIYEHNKEL IMLAGAVTSI VLVLRAGSME ARENAAATLF SLSLADENKI IIGASGAIMA LVDLLQYGSV RGKKDAATAL FNLCIYQGNK
501: GRAVRAGIVK PLVKMLTDSS SERMADEALT ILSVLASNQV AKTAILRANA IPPLIDCLQK DQPRNRENAA AILLCLCKRD TEKLISIGRL GAVVPLMELS
601: RDGTERAKRK ANSLLELLRK SSRKLGSL

Arabidopsis Description

PUB10RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WJE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.