Factsheet for Solyc05g008230.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g110190.2.1
Solyc10g054080.1.1
Solyc11g044880.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71020.1	Solyc01g110190.2.1	AT4G39050.1	21798944
AT1G71020.1	Solyc10g054080.1.1	AT4G39050.1	21798944
AT1G71020.1	Solyc11g044880.1.1	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078473	Potato	cytosol	95.85	95.85
Solyc04g007640.2.1	Tomato	cytosol	73.38	73.72
VIT_01s0011g04770.t01	Wine grape	cytosol	63.38	64.48
KRH50347	Soybean	nucleus	60.46	60.09
KRG89279	Soybean	cytosol	59.85	59.75
CDY25764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	53.54	59.18
CDY21412	Canola	cytosol, endoplasmic reticulum	55.08	58.88
Bra012355.1-P	Field mustard	plasma membrane	53.23	58.84
Bra024559.1-P	Field mustard	cytosol, plasma membrane	55.08	58.78
CDY04746	Canola	cytosol, endoplasmic reticulum	55.08	58.78
AT1G23030.1	Thale cress	cytosol	54.77	58.17
CDY12497	Canola	cytosol	52.92	57.62
AT1G71020.1	Thale cress	cytosol	55.38	57.32
CDX96295	Canola	cytosol, plasma membrane	53.23	56.17
Bra016165.1-P	Field mustard	cytosol, plasma membrane	53.08	56.01
CDX72769	Canola	cytosol	52.0	55.23
CDY04747	Canola	cytosol, golgi	36.77	54.2
Zm00001d000381_P001	Maize	cytosol	48.0	48.9
EES07310	Sorghum	cytosol	47.69	48.59
TraesCS6D01G274500.1	Wheat	cytosol	47.85	48.52
Os02t0732200-01	Rice	cytosol	47.54	48.51
TraesCS6A01G293600.1	Wheat	cytosol	47.54	48.21
TraesCS6B01G324000.1	Wheat	cytosol	47.54	48.06
Solyc12g088360.1.1	Tomato	cytosol	19.23	45.45
GSMUA_Achr9P15600_001	Banana	cytosol	46.46	44.67
Solyc11g008390.1.1	Tomato	cytosol	42.46	44.23
Solyc11g066040.1.1	Tomato	cytosol	42.15	41.33
Solyc06g076040.2.1	Tomato	cytosol	40.92	40.24
Solyc12g094610.1.1	Tomato	cytosol	32.92	39.85
HORVU6Hr1G073280.1	Barley	cytosol	48.0	38.85
Solyc04g077850.2.1	Tomato	cytosol	20.31	37.08
Solyc09g056450.2.1	Tomato	cytosol	25.54	36.97
Solyc04g082440.2.1	Tomato	cytosol	35.38	35.44
Solyc06g051090.1.1	Tomato	cytosol	28.92	33.45
Solyc04g050780.1.1	Tomato	cytosol	20.15	30.39
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	32.0	28.73
Solyc04g050770.1.1	Tomato	cytosol	19.54	28.67
Solyc09g018230.1.1	Tomato	plastid	28.92	27.33
Solyc11g012440.1.1	Tomato	cytosol, plastid	19.08	27.02
Solyc03g114160.1.1	Tomato	cytosol	28.15	26.83
Solyc04g014810.2.1	Tomato	plastid	18.62	26.83
Solyc09g025270.2.1	Tomato	cytosol	30.62	26.57
Solyc12g100000.1.1	Tomato	cytosol, plastid	31.54	25.03
Solyc01g014230.2.1	Tomato	cytosol	30.92	24.78
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	24.15	22.92

Protein Annotations

Gene3D:1.25.10.10	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:K4BWZ7	PFAM:PF00514
PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF52	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc05g008230.2	EnsemblPlants:Solyc05g008230.2.1	UniParc:UPI000276628F
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4BWZ7]

Coordinates

chr5:-:2622044..2626422

Molecular Weight (calculated)

70936.3 Da

IEP (calculated)

8.092

GRAVY (calculated)

-0.138

Length

650 amino acids

Sequence
(BLAST)

001: MAGGEATAVA GDHPIATLLR LLHEVSQISI AGFYGKFKKD CTDLARRVTL LAHLFDELKD TNTLLGSSSS SFNSCFSDLS VALQAAKQLL LAANELDPKI
101: HSDVAVKKIN FRFQCVTWKL EKALGNFPYD HFDISEEVQE QVELVRAQLR RATEKYGGPV KSNLLSRASS QPLDKEIDLL HSGNSGIGTL HIENIGNIDH
201: EVRPKVGRVP RGSVRNQSYC SRIFQESERI GNSSKLSGIG DPEIFGEDDS PLKSHEESKK SNCPVTPTEF ICPISLELMR DPVIVAATGQ TYERSYIQQW
301: IDGGHTTCPK TQQQLHNLTL TPNYALRNLI IDWCAKNNIQ QPTVFANGKI KRSDGSFRYV IGEIGAMEVL VRKLSSRSVE DCRAAVAEIR SLSKRSTDNR
401: ILIAEAGAIP VLVKLLTSED TQIQENAVTA VLNLSIFDDN KRIIMLSDAI PSIVQVLRAG STEAKENAAA TIFSLSLGNE NKILIGASGA IPALIDLLLT
501: GNTRGKKDAA SALFNLCIYQ GNKGRAVRAG IIPALLEMLT DSSSCMVDEP LTILSVLANN QEAKEAIAKT STIPVLIDLL RTGLSRSKEN AAAILLSLCK
601: RDSENLSCLC RLGAVIPLTQ LTMSGTERAK RKATSLLEHI RKSQQHSTRI

Best Arabidopsis Sequence Match ( AT1G71020.1 )
(BLAST)

001: MAGGAITPDS LIGLIAEINE IPGNFGLFKK DCSDLARRVG LLTHLIEEIR DSSPPSESDA SSSLNSHECD WWSDLVVGLQ AAKRLLSSAT SFQARESSDG
101: AAKRISFQFQ CVTWKLEKAL GDLTYDRYDI SDEVREQVEL ARLQLRRAMQ RYGSLNSKKF SSGLSEPMEK DASSNRKVIE KLESIPETVH SLSDEKKFES
201: PPPWKSSSVS LAFFLSKDGD DERLEKAVTE NSDDSQKSDN LTIPEDFLCP ISLELMKDPA IVSTGQTYER SFIQRWIDCG NLSCPKTQQK LENFTLTPNY
301: VLRSLISQWC TKHNIEQPGG YMNGRTKNSD GSFRDLSGDM SAIRALVCKL SSQSIEDRRT AVSEIRSLSK RSTDNRILIA EAGAIPVLVK LLTSDGDTET
401: QENAVTCILN LSIYEHNKEL IMLAGAVTSI VLVLRAGSME ARENAAATLF SLSLADENKI IIGASGAIMA LVDLLQYGSV RGKKDAATAL FNLCIYQGNK
501: GRAVRAGIVK PLVKMLTDSS SERMADEALT ILSVLASNQV AKTAILRANA IPPLIDCLQK DQPRNRENAA AILLCLCKRD TEKLISIGRL GAVVPLMELS
601: RDGTERAKRK ANSLLELLRK SSRKLGSL

Arabidopsis Description

PUB10RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WJE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.