Factsheet for Solyc09g018230.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071349	Potato	plastid	97.97	97.4
VIT_08s0058g01100.t01	Wine grape	plastid	66.28	67.36
KRH76105	Soybean	cytosol, plastid	61.05	59.83
KRH65448	Soybean	plastid	41.42	58.4
Bra001998.1-P	Field mustard	cytosol	50.15	57.79
CDX71307	Canola	cytosol	55.67	56.91
CDY31406	Canola	cytosol	55.67	56.82
AT5G01830.1	Thale cress	plastid	55.67	56.82
Bra019022.1-P	Field mustard	cytosol	55.52	56.68
GSMUA_Achr8P25140_001	Banana	plastid	31.69	51.9
GSMUA_Achr4P00200_001	Banana	plastid	46.51	45.45
Zm00001d043043_P001	Maize	cytosol	43.6	45.25
TraesCS1A01G300000.1	Wheat	cytosol	43.9	45.21
Zm00001d012494_P001	Maize	cytosol	43.46	45.1
Os01t0823900-01	Rice	plastid	44.19	44.71
TraesCS1D01G299400.1	Wheat	cytosol, plastid	43.02	44.38
TraesCS1B01G310100.1	Wheat	plastid	43.46	44.36
TraesCS3A01G345800.1	Wheat	plastid	43.6	43.92
HORVU3Hr1G081300.1	Barley	plastid	43.75	43.75
Zm00001d038471_P001	Maize	cytosol, plasma membrane, plastid	42.59	43.73
HORVU1Hr1G069990.1	Barley	plastid	43.31	43.7
TraesCS3B01G377600.1	Wheat	plastid	43.6	43.67
OQU78182	Sorghum	plastid	43.02	43.59
KXG33626	Sorghum	plastid	44.48	43.59
TraesCS3D01G339600.1	Wheat	plastid	43.6	43.54
GSMUA_Achr7P22130_001	Banana	cytosol	39.97	43.44
Os05t0476700-01	Rice	plastid	42.44	43.13
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	37.5	35.64
Solyc11g008390.1.1	Tomato	cytosol	29.36	32.37
Solyc06g051090.1.1	Tomato	cytosol	25.58	31.32
Solyc11g066040.1.1	Tomato	cytosol	29.8	30.92
Solyc06g076040.2.1	Tomato	cytosol	28.92	30.11
Solyc05g008230.2.1	Tomato	cytosol	27.33	28.92
Solyc04g007640.2.1	Tomato	cytosol	26.45	28.13
Solyc12g094610.1.1	Tomato	cytosol	21.95	28.12
Solyc09g056450.2.1	Tomato	cytosol	17.88	27.39
Solyc03g114160.1.1	Tomato	cytosol	26.89	27.13
Solyc12g088360.1.1	Tomato	cytosol	10.61	26.55
Solyc04g082440.2.1	Tomato	cytosol	24.71	26.19
Solyc05g005670.1.1	Tomato	cytosol, mitochondrion	25.44	25.55
Solyc04g050780.1.1	Tomato	cytosol	15.84	25.29
Solyc04g050770.1.1	Tomato	cytosol	15.7	24.38
Solyc04g077850.2.1	Tomato	cytosol	11.77	22.75
Solyc12g100000.1.1	Tomato	cytosol, plastid	26.16	21.98
Solyc01g014230.2.1	Tomato	cytosol	25.87	21.95
Solyc04g014810.2.1	Tomato	plastid	13.81	21.06
Solyc09g025270.2.1	Tomato	cytosol	22.67	20.83
Solyc11g012440.1.1	Tomato	cytosol, plastid	13.81	20.7

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009987	GO:GO:0010200	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
UniProt:K4CS90	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF63
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc09g018230.1	EnsemblPlants:Solyc09g018230.1.1	UniParc:UPI000276C114
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

U-box domain-containing protein 16 [Source:Projected from Arabidopsis thaliana (AT5G01830) UniProtKB/Swiss-Prot;Acc:Q9LZW3]

Coordinates

chr9:-:13637609..13639675

Molecular Weight (calculated)

75770.6 Da

IEP (calculated)

8.620

GRAVY (calculated)

-0.027

Length

688 amino acids

Sequence
(BLAST)

001: MAVSPESFPP RKRRPSANCF VAPNLSDRNL LKSLLLLSSE ISTLKPLLFL LKRNTSSIIR KSKLLSVLFE EILGRDFTYS NTSRGGGGHV TGFPPSAVLC
101: FDELYIVLQR MKTLLEDCRN CSKMWLLMQI DVFCNVFHEL TLELSTLLDI LPSKKLKLND DVQELLILIT KQCSEKFTYV DPKDRDLRSQ VVEMLDRIER
201: EIVPDQCELA EIFEKLTLRD STSCRDEIEL LEEEIQSQTD EKAKSDIIAL IGFVRYAKCV LYGGSTPRTN SRRRRAAADV NVPADFRCPI SLDLMKDPVV
301: VSTGQTYDRS SITLWFESGH TTCPKTGQTL THTDLIQNSA LKNLIAMWCR EQKIPFESTQ MNVKSNGVVT NKTALEATRM TVSFLVNKLK ASQVVESANR
401: LVHELRVLAK TDSDSRACIA EAAALPLMVK LLGSEHPGLQ VNAVTTILNL SILEANKTRI METDGVLNGV IEVLRSGATW EAKGNAAATI FSLSGVPAYK
501: KRLARKTRVV KGLMDLAREG PTNSKRDALV AILNLAGDRE AVGKLIEGGV VEMVAEIMDG LPEEAVTILE VVVKKGGLVA IAAAYPLMKK LAIVLRDGTD
601: RARESAAATL VNMCRKGGSE MVAELAGVQG IERVIWEIMG MGTGRGRRKA ATLLRVLRRW AAGLDAEVAS GAYSDVNMNT STRIVLPG

Best Arabidopsis Sequence Match ( AT5G01830.1 )
(BLAST)

001: MAVTLDSPSP ARKRRPLVVG SFESPKLSSD TKLTRSLFLA SHEISSMQPL PFILRRNSLS LIRKVKILAS VFDELLLPRS QLVVYSQSAH LCFEEMQIVM
101: QRIKSLIDDC SRVSKLWLLL QIDIVAFNFH ELVTDLSTVL DILPLHDFDL SDDAQDLISL LTKQCSDSVQ FVDARDVALR RKVTDTIAGI KHQISPDHST
201: LIKIFNDLGL SDSASLTDEI QRLEDEIQDQ IDDRSKSAAA SLIGLVRYSK CVLYGPSTPA PDFRRHQSLS DANIPADFRC PITLELMRDP VVVATGQTYD
301: RESIDLWIQS GHNTCPKTGQ VLKHTSLVPN RALKNLIVLW CRDQKIPFEL YGDGGGEPAP CKEAVEFTKM MVSFLIEKLS VADSNGVVFE LRALAKSDTV
401: ARACIAEAGA IPKLVRYLAT ECPSLQINAV TTILNLSILE QNKTRIMETD GALNGVIEVL RSGATWEAKA NAAATLFSLA GVSAYRRRLG RKARVVSGLV
501: DLAKQGPTSS KRDALVAILN LVAERENVGR FVEAGVMGAA GDAFQELPEE AVAVVEAVVR RGGLMAVSAA FSLIRLLGEV MREGADTTRE SAAATLVTMC
601: RKGGSELVAE MAAIPGIERV IWEMIGAGTA RGGRKAASLM RYLRRWAAGD THNTAAETQS IVVPTPSRIF SPVL

Arabidopsis Description

PUB16RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178UNI7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.