Factsheet for Os01t0823900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G345800.1	Wheat	plastid	88.24	87.85
TraesCS3B01G377600.1	Wheat	plastid	88.24	87.34
TraesCS3D01G339600.1	Wheat	plastid	88.09	86.94
HORVU3Hr1G081300.1	Barley	plastid	87.06	86.05
Zm00001d043043_P001	Maize	cytosol	83.53	85.67
Zm00001d012494_P001	Maize	cytosol	83.53	85.67
KXG33626	Sorghum	plastid	84.56	81.91
Os05t0476700-01	Rice	plastid	76.18	76.51
GSMUA_Achr8P25140_001	Banana	plastid	37.65	60.95
GSMUA_Achr7P22130_001	Banana	cytosol	50.44	54.19
GSMUA_Achr4P00200_001	Banana	plastid	54.12	52.27
VIT_08s0058g01100.t01	Wine grape	plastid	44.26	44.46
Solyc09g018230.1.1	Tomato	plastid	44.71	44.19
PGSC0003DMT400071349	Potato	plastid	44.71	43.93
Bra001998.1-P	Field mustard	cytosol	38.38	43.72
AT5G01830.1	Thale cress	plastid	42.79	43.18
CDX71307	Canola	cytosol	42.35	42.79
Bra019022.1-P	Field mustard	cytosol	42.21	42.58
CDY31406	Canola	cytosol	42.06	42.43
KRH76105	Soybean	cytosol, plastid	41.91	40.6
KRH65448	Soybean	plastid	27.94	38.93
Os02t0234300-01	Rice	cytosol	28.24	33.05
Os02t0488600-01	Rice	cytosol, nucleus	19.56	31.44
Os06t0102700-01	Rice	plasma membrane	26.32	29.64
Os12t0570000-01	Rice	cytosol	22.21	29.21
Os07t0587500-01	Rice	cytosol	15.0	28.18
Os04t0348400-01	Rice	cytosol	18.97	28.1
Os03t0275900-01	Rice	cytosol	28.82	27.0
Os06t0726900-00	Rice	cytosol	15.0	26.84
Os09t0378700-00	Rice	plasma membrane, plastid	28.09	26.83
Os08t0481200-01	Rice	cytosol	25.0	26.48
Os02t0732200-01	Rice	cytosol	24.12	25.75
Os08t0415600-00	Rice	cytosol	27.06	25.66
Os03t0435300-00	Rice	cytosol	14.56	24.75
Os07t0584900-01	Rice	plastid	15.59	22.7
Os08t0110500-01	Rice	plasma membrane	23.97	19.78
Os01t0884400-01	Rice	plasma membrane	22.65	18.38

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4327575	EMBL:AK065307	InterPro:ARM-like
InterPro:ARM-type_fold	EMBL:AY224536	InterPro:Armadillo	ProteinID:BAB93187.1	ProteinID:BAF06577.1	ProteinID:BAS74996.1
ncoils:Coil	ProteinID:EEE55600.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EnsemblPlantsGene:Os01g0823900
EnsemblPlants:Os01t0823900-01	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF147	UniProt:Q8LRC7	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI000005F903	InterPro:Ubox_domain	RefSeq:XP_015621922.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

arm repeat cell adhesion protein, arm repeat protein, plant U-box-containing protein 3, U-box protein 3U-box E3ubiquitin ligase, Positive regulation of cold stress response (Os01t0823900-01)

Coordinates

chr1:-:35185594..35188003

Molecular Weight (calculated)

72326.1 Da

IEP (calculated)

5.851

GRAVY (calculated)

0.054

Length

680 amino acids

Sequence
(BLAST)

001: MAGNPAAAAP SSSGSSSVFL PPPSPSDGEL LRPLHRLARD LSAVDTPAPF LRAAFASISR RSKLLAAAFD DLLLCGAAGE LPRSASLCLR EVLLVLQRFK
101: AIVADCSARS RMRLLLESDE MEAELRELNH DLATLLDLLP VVELGLADDV LDVLALASRQ CRRCSPAPES EEALKASVLS LIQEIEREIV PERERLEEIL
201: VEVGINDPAS CSEEIESLEQ EIGDRASEKW TASMIALVGL LRYAKCVLFS ATPRPSDSNS KADVEAEDGE PPVPPSDFRC PISLDLMRDP VVVASGQTYD
301: RESIDRWFSS GKSTCPKTGQ VLANLELVSN KALKNLISKW CRENGVAMEA CEASKSEQAQ AVAANKAALE AARMTASFLV KKLSVSFSPD AANRVVHEIR
401: LLSKSGSENR AFVGEAGAVP LLVPLLYSED AGLQLNAVTA LLNLSILEAN KKRIMHADGA VEAVAHIMSS GATWRAKENA AAAVLSLASV HSYRRRLGRN
501: QSVVEKLVHL VRTGPTSTKK DALAALLTLA GERENVGKLV DAGVAEVALS AISKEETAAA VLAALAKRGG AEAIVNIDGA VARLVAEMRR GTDWARENAT
601: AALVLLCRRL GAPAVTQVMA VPGVEWAIWE LMSIGTERAR RKAASLGRIC RRWAAASAAD GERGGGCPVA TVVPPAMMAS

Best Arabidopsis Sequence Match ( AT5G01830.1 )
(BLAST)

001: MAVTLDSPSP ARKRRPLVVG SFESPKLSSD TKLTRSLFLA SHEISSMQPL PFILRRNSLS LIRKVKILAS VFDELLLPRS QLVVYSQSAH LCFEEMQIVM
101: QRIKSLIDDC SRVSKLWLLL QIDIVAFNFH ELVTDLSTVL DILPLHDFDL SDDAQDLISL LTKQCSDSVQ FVDARDVALR RKVTDTIAGI KHQISPDHST
201: LIKIFNDLGL SDSASLTDEI QRLEDEIQDQ IDDRSKSAAA SLIGLVRYSK CVLYGPSTPA PDFRRHQSLS DANIPADFRC PITLELMRDP VVVATGQTYD
301: RESIDLWIQS GHNTCPKTGQ VLKHTSLVPN RALKNLIVLW CRDQKIPFEL YGDGGGEPAP CKEAVEFTKM MVSFLIEKLS VADSNGVVFE LRALAKSDTV
401: ARACIAEAGA IPKLVRYLAT ECPSLQINAV TTILNLSILE QNKTRIMETD GALNGVIEVL RSGATWEAKA NAAATLFSLA GVSAYRRRLG RKARVVSGLV
501: DLAKQGPTSS KRDALVAILN LVAERENVGR FVEAGVMGAA GDAFQELPEE AVAVVEAVVR RGGLMAVSAA FSLIRLLGEV MREGADTTRE SAAATLVTMC
601: RKGGSELVAE MAAIPGIERV IWEMIGAGTA RGGRKAASLM RYLRRWAAGD THNTAAETQS IVVPTPSRIF SPVL

Arabidopsis Description

PUB16RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178UNI7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.