Factsheet for Os06t0726900-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G121810.1	Barley	cytosol	59.21	35.1
TraesCS7A01G549700.1	Wheat	cytosol	58.95	34.67
TraesCS7D01G536300.1	Wheat	cytosol	57.89	34.11
Zm00001d014845_P001	Maize	cytosol	56.32	33.39
KXG20946	Sorghum	cytosol	56.32	33.28
TraesCS7B01G473200.1	Wheat	cytosol	58.95	33.23
Solyc12g094610.1.1	Tomato	cytosol	45.53	32.22
Os08t0481200-01	Rice	cytosol	53.95	31.93
VIT_03s0038g03660.t01	Wine grape	cytosol	48.68	28.86
KRH00831	Soybean	cytosol	46.05	27.56
KRH40395	Soybean	cytosol	46.05	27.56
Os02t0488600-01	Rice	cytosol, nucleus	30.53	27.42
PGSC0003DMT400025648	Potato	cytosol	46.58	27.27
Solyc04g082440.2.1	Tomato	cytosol	46.32	27.12
PGSC0003DMT400075612	Potato	cytosol	45.53	26.82
AT5G42340.1	Thale cress	cytosol	46.58	26.82
Bra027977.1-P	Field mustard	cytosol	45.79	26.69
CDX95193	Canola	cytosol	45.79	26.56
CDY68037	Canola	cytosol	45.79	26.56
Os12t0570000-01	Rice	cytosol	36.05	26.5
VIT_18s0001g14180.t01	Wine grape	cytosol	47.37	26.32
Os07t0587500-01	Rice	cytosol	24.21	25.41
GSMUA_Achr4P05030_001	Banana	cytosol	34.74	25.19
GSMUA_Achr4P04900_001	Banana	cytosol	35.0	25.19
Os06t0102700-01	Rice	plasma membrane	38.95	24.5
KRH33490	Soybean	cytosol	31.84	23.05
Os04t0348400-01	Rice	cytosol	27.11	22.44
Os03t0435300-00	Rice	cytosol	23.16	22.0
Os02t0732200-01	Rice	cytosol	36.84	21.98
Os07t0584900-01	Rice	plastid	25.26	20.56
Os03t0275900-01	Rice	cytosol	37.37	19.56
Os02t0234300-01	Rice	cytosol	29.74	19.45
Os08t0110500-01	Rice	plasma membrane	37.11	17.11
Os01t0884400-01	Rice	plasma membrane	33.16	15.04
Os01t0823900-01	Rice	plastid	26.84	15.0
Os05t0476700-01	Rice	plastid	25.53	14.33
Os09t0378700-00	Rice	plasma membrane, plastid	25.26	13.48
Os08t0415600-00	Rice	cytosol	25.0	13.25

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A0P0X147	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	ProteinID:BAS99607.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
EnsemblPlantsGene:Os06g0726900	EnsemblPlants:Os06t0726900-00	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698
PANTHER:PTHR23315	PANTHER:PTHR23315:SF223	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI000393B10A	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

plant U-box-containing protein 13, U-box protein 13Armadillo domain containing protein. (Os06t0726900-00)

Coordinates

chr6:+:30925122..30930159

Molecular Weight (calculated)

40654.1 Da

IEP (calculated)

9.038

GRAVY (calculated)

-0.292

Length

380 amino acids

Sequence
(BLAST)

001: MQTYERRSIQ KWLDAGQRTC PKTQQPLGHL SLAPNYALKN LIMQWCDKNK VEIHSGDPPP EPPEDPKVVI PTLVKDLSSP NLDVQRKAVK KIRTLSKENP
101: ENRLLVTDNA GIPALIGLLP YPDKKMQENT VTSLLNLSID EANKLLIARG GAIPLIIDVL RNGSVEGQEN SAAALFSLSM VDENKVAIGT LGGIPPLVDL
201: LQNGTVRGKK DASTAIFNLM LNNGNKLRAI EAGILPTLLK LLDDKKAAMV DEALSIFLLL ASNPTCRGEV GTEHFAGRGG PGRGDGMEAA AGDPTRGGEM
301: EAAAGCVGGG GGRLCWARGD KMGRLAPVER AAAGAGREAA AGAGRDGGGR RRSGWRQPTP IGRRRQENFF FLFFVLSDEC

Best Arabidopsis Sequence Match ( AT1G23030.1 )
(BLAST)

001: MAGGIVSPAS LLDLIADIVE IPLNTGMFKK DCADLTRRVC LLTHLLEEIR DSTPIDSAAS SSSENDWWSD LVVGLQAAKR LLSTARFQAR DSSDGAAKRI
101: SFQFQCVTWK LEKALSNLPY DLYDISDEVG EQVELARSQL RRAMQRYGSL NSNKFSSALS EPMERDGFSN VIKIKAEEKL ESVSETLHFG EEEEKQSSPP
201: LRRSSSISLA YYLSKDADTD RLDKMVNKNT DESKKSDKLT IPVDFLCPVS LELMKDPVIV ATGQTYERAY IQRWIDCGNL TCPKTQQKLE NFTLTPNYVL
301: RSLISRWCAE HNIEQPAGYI NGRTKNSGDM SVIRALVQRL SSRSTEDRRN AVSEIRSLSK RSTDNRILIA EAGAIPVLVN LLTSEDVATQ ENAITCVLNL
401: SIYENNKELI MFAGAVTSIV QVLRAGTMEA RENAAATLFS LSLADENKII IGGSGAIPAL VDLLENGTPR GKKDAATALF NLCIYHGNKG RAVRAGIVTA
501: LVKMLSDSTR HRMVDEALTI LSVLANNQDA KSAIVKANTL PALIGILQTD QTRNRENAAA ILLSLCKRDT EKLITIGRLG AVVPLMDLSK NGTERGKRKA
601: ISLLELLRKA CQ

Arabidopsis Description

PUB11RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WCR1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.