Factsheet for VIT_18s0001g14180.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40395	Soybean	cytosol	60.23	64.88
KRH00831	Soybean	cytosol	60.23	64.88
VIT_03s0038g03660.t01	Wine grape	cytosol	59.94	63.96
CDX95193	Canola	cytosol	57.6	60.15
CDY68037	Canola	cytosol	57.46	60.0
Bra027977.1-P	Field mustard	cytosol	57.02	59.82
AT5G42340.1	Thale cress	cytosol	57.6	59.7
PGSC0003DMT400025648	Potato	cytosol	56.14	59.17
Solyc04g082440.2.1	Tomato	cytosol	55.99	59.01
GSMUA_Achr4P04900_001	Banana	cytosol	45.18	58.52
PGSC0003DMT400075612	Potato	cytosol	55.12	58.45
Solyc12g094610.1.1	Tomato	cytosol	45.76	58.29
KRH33490	Soybean	cytosol	44.59	58.1
GSMUA_Achr4P05030_001	Banana	cytosol	43.86	57.25
Os08t0481200-01	Rice	cytosol	50.0	53.27
TraesCS7D01G289800.1	Wheat	cytosol	50.0	53.11
TraesCS7B01G186600.1	Wheat	cytosol	50.0	53.11
KXG20946	Sorghum	cytosol	49.85	53.03
Zm00001d014845_P001	Maize	cytosol	49.56	52.89
TraesCS7D01G536300.1	Wheat	cytosol	49.85	52.87
TraesCS7A01G293900.1	Wheat	cytosol	49.71	52.8
HORVU7Hr1G061800.2	Barley	cytosol	49.71	52.8
HORVU7Hr1G121810.1	Barley	cytosol	49.12	52.42
TraesCS7A01G549700.1	Wheat	cytosol	49.12	52.01
EES15482	Sorghum	cytosol	48.83	51.94
Zm00001d031263_P001	Maize	cytosol	48.54	51.47
TraesCS7B01G473200.1	Wheat	cytosol	49.56	50.3
Os06t0726900-00	Rice	cytosol	26.32	47.37
VIT_13s0019g04710.t01	Wine grape	cytosol	38.16	41.56
VIT_06s0004g04530.t01	Wine grape	cytosol	40.5	40.62
VIT_01s0011g04770.t01	Wine grape	cytosol	33.48	35.84
VIT_04s0043g00840.t01	Wine grape	cytosol	21.78	32.75
VIT_00s0524g00030.t01	Wine grape	cytosol	21.2	32.29
VIT_13s0067g01460.t01	Wine grape	cytosol	30.99	30.81
VIT_18s0001g09130.t01	Wine grape	cytosol	16.81	29.64
VIT_10s0003g01730.t01	Wine grape	mitochondrion	30.12	28.37
VIT_07s0005g03520.t01	Wine grape	cytosol	31.43	27.32
VIT_00s2269g00010.t01	Wine grape	plastid	17.84	26.99
VIT_17s0000g08080.t01	Wine grape	cytosol, mitochondrion	26.75	26.95
VIT_08s0058g01100.t01	Wine grape	plastid	26.32	26.59
VIT_07s0129g00590.t01	Wine grape	cytosol	32.6	26.3
VIT_01s0026g00190.t01	Wine grape	cytosol	24.42	24.45

Protein Annotations

Gene3D:1.20.930.20	Gene3D:1.25.10.10	EntrezGene:100245355	wikigene:100245355	Gene3D:3.30.40.10	MapMan:35.1
EMBL:AM484866	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Adaptor_Cbl_N_dom_sf	InterPro:Armadillo	ProteinID:CAN75366
ProteinID:CAN75366.1	ProteinID:CBI19855	ProteinID:CBI19855.3	UniProt:E0CQ50	EMBL:FN595227	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0007166	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
InterPro:IPR036537	EntrezGene:LOC100245355	wikigene:LOC100245355	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF49	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI0001BE1CB0	InterPro:Ubox_domain	ArrayExpress:VIT_18s0001g14180	EnsemblPlantsGene:VIT_18s0001g14180	EnsemblPlants:VIT_18s0001g14180.t01
unigene:Vvi.20766	RefSeq:XP_002280063	RefSeq:XP_002280063.2	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:E0CQ50]

Coordinates

chr18:-:12216225..12219253

Molecular Weight (calculated)

75705.0 Da

IEP (calculated)

6.526

GRAVY (calculated)

-0.134

Length

684 amino acids

Sequence
(BLAST)

001: MVMDGEVEEG GGGQVVETGE EETAPNASNT QGCTCEVQEL MVVIGSIVAI GDYRRTQKKE CQNLVRRLKL LLPLLEDVKD LHGQVPEKSL NPFWNLKKAL
101: LRVKKLLITC SEGSKIYLAL ENEAVMARFH RANEKLSQAL EDLPYEELGV SEEVKEELDL VRMHLKRSKR RTDTQDIELA MDMMVVFSKD DERNADSAII
201: VRLAKKLELL TVEDLNAETI AVRKLVKERG GQNAESTQHV IELLNKFRQS GGLEEINVLD DPIVPKTLEK SPSLAIPHEF LCPITLEIMT DPVFVATGQT
301: YERESIQKWL DSNHKTCPKT MQPLVHSSLV PNYALRNLIL QWCENNNFQI PKKDASSSTE GSSEQKESVL SVVQNLSSNQ LEVQRKAAKK IRMLSKENPV
401: NRVLIAQSGG IPPLVQLLSY PDSKIQEHTV TALLNLSIDE ANKKLIAIEG AIPAIIDVLR KGSVEAKGNS AAALFSLSID DDIKAAIGLS NGIPPLVDLL
501: QHGTIRGKRD AATALFNLSL NKANKTRAIE AGVIPPLLQL IKSPNSGMID EALSILFLLA SHPDGRQEIG QLSVIETLVE FIRDGTTKNK ECATSVLLEL
601: GSSNSSFILA ALQYGVLEHL IEITKSGNSR AQRKANSLLQ LMSRISFLRQ MCAVNILTFG KKFLRHILPT RLFTVVFLIE NMSV

Best Arabidopsis Sequence Match ( AT5G42340.1 )
(BLAST)

001: MVDVMDTDEE ATGDAENRDE EVTAEEPIHD EVVDAVEIHE EEVKEDDDDC EGLVSDIVSI VEFLDQINGY RRTQQKECFN LVRRLKILIP FLDEIRGFES
101: PSCKHFLNRL RKVFLAAKKL LETCSNGSKI YMALDGETMM TRFHSIYEKL NRVLVKAPFD ELMISGDAKD EIDSLCKQLK KAKRRTDTQD IELAVDMMVV
201: FSKTDPRNAD SAIIERLAKK LELQTIDDLK TETIAIQSLI QDKGGLNIET KQHIIELLNK FKKLQGLEAT DILYQPVINK AITKSTSLIL PHEFLCPITL
301: EIMLDPVIIA TGQTYEKESI QKWFDAGHKT CPKTRQELDH LSLAPNFALK NLIMQWCEKN NFKIPEKEVS PDSQNEQKDE VSLLVEALSS SQLEEQRRSV
401: KQMRLLAREN PENRVLIANA GAIPLLVQLL SYPDSGIQEN AVTTLLNLSI DEVNKKLISN EGAIPNIIEI LENGNREARE NSAAALFSLS MLDENKVTIG
501: LSNGIPPLVD LLQHGTLRGK KDALTALFNL SLNSANKGRA IDAGIVQPLL NLLKDKNLGM IDEALSILLL LASHPEGRQA IGQLSFIETL VEFIRQGTPK
601: NKECATSVLL ELGSNNSSFI LAALQFGVYE YLVEITTSGT NRAQRKANAL IQLISKSEQI

Arabidopsis Description

PUB15U-box domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q681N2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.