CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031263_P001	Maize	cytosol	90.82	90.54
Os08t0481200-01	Rice	cytosol	81.65	81.78
TraesCS7D01G289800.1	Wheat	cytosol	79.63	79.5
TraesCS7B01G186600.1	Wheat	cytosol	79.63	79.5
TraesCS7A01G293900.1	Wheat	cytosol	79.47	79.35
HORVU7Hr1G061800.2	Barley	cytosol	79.16	79.04
KXG20946	Sorghum	cytosol	69.98	69.98
GSMUA_Achr4P05030_001	Banana	cytosol	51.48	63.17
GSMUA_Achr4P04900_001	Banana	cytosol	49.77	60.61
VIT_03s0038g03660.t01	Wine grape	cytosol	55.37	55.54
KRH40395	Soybean	cytosol	53.03	53.7
KRH00831	Soybean	cytosol	52.41	53.07
PGSC0003DMT400025648	Potato	cytosol	53.03	52.54
Solyc04g082440.2.1	Tomato	cytosol	52.72	52.23
Solyc12g094610.1.1	Tomato	cytosol	41.37	49.53
CDY68037	Canola	cytosol	50.39	49.47
Bra027977.1-P	Field mustard	cytosol	49.92	49.23
CDX95193	Canola	cytosol	50.08	49.16
VIT_18s0001g14180.t01	Wine grape	cytosol	51.94	48.83
PGSC0003DMT400075612	Potato	cytosol	48.37	48.22
AT5G42340.1	Thale cress	cytosol	49.46	48.18
KRH33490	Soybean	cytosol	38.57	47.24
EER87680	Sorghum	cytosol	37.17	39.77
OQU79384	Sorghum	cytosol	36.86	35.59
EES07310	Sorghum	cytosol	34.21	34.48
EES06804	Sorghum	cytosol	23.95	33.19
OQU92820	Sorghum	cytosol	38.41	32.98
EER97464	Sorghum	cytosol	18.35	32.6
OQU78182	Sorghum	plastid	27.06	25.63
EES04812	Sorghum	plastid	28.62	25.24
EER97453	Sorghum	plastid	18.04	24.79
EES01872	Sorghum	cytosol	30.95	24.72
KXG33626	Sorghum	plastid	26.91	24.64
OQU80426	Sorghum	endoplasmic reticulum, plasma membrane	24.11	21.71
KXG35540	Sorghum	plasma membrane	23.95	21.51
EES14396	Sorghum	cytosol	31.88	20.36

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:8055381	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	UniProt:C5YJR1	ncoils:Coil	EnsemblPlants:EES15482	ProteinID:EES15482	ProteinID:EES15482.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176
PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF49	SMART:SM00185	SMART:SM00504	EnsemblPlantsGene:SORBI_3007G226500
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0001A879BA	InterPro:Ubox_domain	RefSeq:XP_002445987.1	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:65359548..65364201

Molecular Weight (calculated)

71108.6 Da

IEP (calculated)

7.417

GRAVY (calculated)

-0.242

Length

643 amino acids

Sequence
(BLAST)

001: MPPPTLPPSS PDDPAVGREM DDEDLVEELL VTVNSARAFA EFRRTQRKEC ANLLRWLQLV LPLLEELREA APRLTDDAYR RLALLGRALA TARRLLRSCH
101: DGSKIYLALE SETVLAKFRD VYEKMHSALD GMPYAELAIS DEVKEQVELM NAQLMRCKKR TDTQDMELSM DLMVILQLQN KEEERNADRA ILERLAKKLE
201: LQSLAELRAE TMAIKKLINN SGSGGQQQQQ LADSTRQMVD LLNRFKEIAG VDEKDVLGGE VSMPKSLDKC PSLMIPNDFL CPITLEIMTD PVIVASGQTY
301: ERRSIQKWLD SGERTCPKSR QPLAHLSLAP NYALKNLILQ WCDKHMVELQ KRETEEHKAE AEDIPSLVEG MSSIHPDVQR KAVKKIRRLS KECPENRTLI
401: ADTGGIPALI GLLACPDKKV QENTVTSLLN LSIDDKNKVL IARGGAIPLV IEILRNGTPE AQENSAATLF SLSMLDENKA AIGSLGGLAP LVELLRSSGT
501: ARGKKDAATA IFNLVLCPQN KARATQAGIV PALLKVMDDK ALGMVDEALS IFLLLASHAA CRAEIGTTAF VEKLVRLIKD GNSTPKNKEC ALSVLLELGT
601: NNRPLLVHGL RFGLHEDLSK IAKNGTSRAQ RKANSLIQLA RKL

Best Arabidopsis Sequence Match ( AT5G42340.1 )
(BLAST)

001: MVDVMDTDEE ATGDAENRDE EVTAEEPIHD EVVDAVEIHE EEVKEDDDDC EGLVSDIVSI VEFLDQINGY RRTQQKECFN LVRRLKILIP FLDEIRGFES
101: PSCKHFLNRL RKVFLAAKKL LETCSNGSKI YMALDGETMM TRFHSIYEKL NRVLVKAPFD ELMISGDAKD EIDSLCKQLK KAKRRTDTQD IELAVDMMVV
201: FSKTDPRNAD SAIIERLAKK LELQTIDDLK TETIAIQSLI QDKGGLNIET KQHIIELLNK FKKLQGLEAT DILYQPVINK AITKSTSLIL PHEFLCPITL
301: EIMLDPVIIA TGQTYEKESI QKWFDAGHKT CPKTRQELDH LSLAPNFALK NLIMQWCEKN NFKIPEKEVS PDSQNEQKDE VSLLVEALSS SQLEEQRRSV
401: KQMRLLAREN PENRVLIANA GAIPLLVQLL SYPDSGIQEN AVTTLLNLSI DEVNKKLISN EGAIPNIIEI LENGNREARE NSAAALFSLS MLDENKVTIG
501: LSNGIPPLVD LLQHGTLRGK KDALTALFNL SLNSANKGRA IDAGIVQPLL NLLKDKNLGM IDEALSILLL LASHPEGRQA IGQLSFIETL VEFIRQGTPK
601: NKECATSVLL ELGSNNSSFI LAALQFGVYE YLVEITTSGT NRAQRKANAL IQLISKSEQI

Arabidopsis Description

PUB15U-box domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q681N2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.