Factsheet for PGSC0003DMT400075612

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g094610.1.1	Tomato	cytosol	79.22	95.16
PGSC0003DMT400025648	Potato	cytosol	72.09	71.65
KRH40395	Soybean	cytosol	57.36	58.27
KRH00831	Soybean	cytosol	57.36	58.27
CDX95193	Canola	cytosol	56.12	55.27
VIT_18s0001g14180.t01	Wine grape	cytosol	58.45	55.12
CDY68037	Canola	cytosol	55.97	55.11
Bra027977.1-P	Field mustard	cytosol	55.66	55.06
GSMUA_Achr4P05030_001	Banana	cytosol	44.65	54.96
GSMUA_Achr4P04900_001	Banana	cytosol	43.72	53.41
AT5G42340.1	Thale cress	cytosol	54.42	53.18
KRH33490	Soybean	cytosol	43.26	53.14
KXG20946	Sorghum	cytosol	50.7	50.86
Zm00001d014845_P001	Maize	cytosol	50.39	50.7
Os08t0481200-01	Rice	cytosol	50.23	50.47
HORVU7Hr1G121810.1	Barley	cytosol	50.08	50.39
TraesCS7A01G549700.1	Wheat	cytosol	50.23	50.15
TraesCS7D01G536300.1	Wheat	cytosol	50.08	50.08
TraesCS7D01G289800.1	Wheat	cytosol	49.92	50.0
HORVU7Hr1G061800.2	Barley	cytosol	49.46	49.53
TraesCS7A01G293900.1	Wheat	cytosol	49.46	49.53
TraesCS7B01G186600.1	Wheat	cytosol	49.46	49.53
TraesCS7B01G473200.1	Wheat	cytosol	50.54	48.37
EES15482	Sorghum	cytosol	48.22	48.37
Zm00001d031263_P001	Maize	cytosol	48.06	48.06
Os06t0726900-00	Rice	cytosol	26.82	45.53
PGSC0003DMT400019235	Potato	cytosol	39.07	40.38
PGSC0003DMT400001049	Potato	cytosol	40.93	39.76
PGSC0003DMT400078166	Potato	cytosol	40.16	39.18
PGSC0003DMT400078473	Potato	cytosol	36.12	35.85
PGSC0003DMT400015349	Potato	cytosol	35.5	35.39
PGSC0003DMT400016998	Potato	cytosol	21.55	30.96
PGSC0003DMT400077205	Potato	cytosol	32.25	30.63
PGSC0003DMT400030161	Potato	cytosol	16.74	30.17
PGSC0003DMT400027542	Potato	cytosol	16.43	29.78
PGSC0003DMT400011486	Potato	cytosol	15.66	28.29
PGSC0003DMT400039084	Potato	cytosol	18.29	26.64
PGSC0003DMT400073254	Potato	cytosol	29.3	26.11
PGSC0003DMT400062931	Potato	cytosol	27.6	26.1
PGSC0003DMT400034564	Potato	nucleus, plastid	17.98	25.33
PGSC0003DMT400026700	Potato	cytosol	30.39	25.19
PGSC0003DMT400060674	Potato	plastid	17.52	25.06
PGSC0003DMT400095861	Potato	cytosol, plasma membrane	21.71	25.0
PGSC0003DMT400027406	Potato	cytosol	10.23	24.72
PGSC0003DMT400082693	Potato	cytosol	9.15	24.18
PGSC0003DMT400090858	Potato	cytosol, mitochondrion	16.74	23.74
PGSC0003DMT400071349	Potato	plastid	24.96	23.27
PGSC0003DMT400046295	Potato	cytosol	29.61	23.26

Protein Annotations

Gene3D:1.20.930.20	Gene3D:1.25.10.10	EntrezGene:102579173	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Adaptor_Cbl_N_dom_sf	InterPro:Armadillo	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0007166	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
InterPro:IPR036537	UniProt:M1CVH5	PFAM:PF00514	PFAM:PF04564	EnsemblPlantsGene:PGSC0003DMG400029409	PGSC:PGSC0003DMG400029409
EnsemblPlants:PGSC0003DMT400075612	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315	PANTHER:PTHR23315:SF49	SMART:SM00185
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000294E7C1	InterPro:Ubox_domain	RefSeq:XP_006342541.1
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

E3 ubiquitin ligase PUB14 [Source:PGSC_GENE;Acc:PGSC0003DMG400029409]

Coordinates

chr12:+:57428689..57432741

Molecular Weight (calculated)

72836.9 Da

IEP (calculated)

5.327

GRAVY (calculated)

-0.373

Length

645 amino acids

Sequence
(BLAST)

001: MAMDRDHELE EGVTVEEEFG SSCQTSPQDK REVVRELIGV IHTVGSYEEY RRSQREECHY LSERLKLLLP LFEEIRDFEG QIPESSIECL MKLKKAFSSA
101: KKLLKTCHCG SKIYLAIESE AVMGRFYSVY ERLSQALENM PYDDFGISDE EKEQVELLRG QFRRAKKRND SQDMELTMDL MVALSTNDDR NADSASIERL
201: GNKLGLRTLE DLKLETISVR RVVKERKGRH AEETQKIVGL LNKFRSFAGL EEIEPLMIKV HEKSTALAIP NEFLCPITLE IMADPLTVST GQTYERENIQ
301: HLLDSGCQTC PKTGKILEHL SLTPNFALKN LIQQWCEKNN FQLPQKQEPP KPESPSDESD EQVLSLIQDL SSSHLEVQRK AVKEIRMLSK ENPENRTLVV
401: NRGGIPPLVH LLSYPDSIIQ EHAVTALLNL SIDETNKKLI SKEEPILAII EILQNGNVGA KENSAAALFS LSMLDENKEA IGLLNGIPPL IELLKNGTIR
501: GKKDAITALF NLCLNEQNVR LANEAGIVAP LFQLLEKKNI EMVDEALSLL LLLATHQDGR QEMGKLTFIE TLVNLMRDGT PKNKECSVAV LHRLSIHNSN
601: HMLAALQYGV YEYLVEIGES GTDRGQRKAK SILQHMSKTE QIPCL

Best Arabidopsis Sequence Match ( AT5G42340.1 )
(BLAST)

001: MVDVMDTDEE ATGDAENRDE EVTAEEPIHD EVVDAVEIHE EEVKEDDDDC EGLVSDIVSI VEFLDQINGY RRTQQKECFN LVRRLKILIP FLDEIRGFES
101: PSCKHFLNRL RKVFLAAKKL LETCSNGSKI YMALDGETMM TRFHSIYEKL NRVLVKAPFD ELMISGDAKD EIDSLCKQLK KAKRRTDTQD IELAVDMMVV
201: FSKTDPRNAD SAIIERLAKK LELQTIDDLK TETIAIQSLI QDKGGLNIET KQHIIELLNK FKKLQGLEAT DILYQPVINK AITKSTSLIL PHEFLCPITL
301: EIMLDPVIIA TGQTYEKESI QKWFDAGHKT CPKTRQELDH LSLAPNFALK NLIMQWCEKN NFKIPEKEVS PDSQNEQKDE VSLLVEALSS SQLEEQRRSV
401: KQMRLLAREN PENRVLIANA GAIPLLVQLL SYPDSGIQEN AVTTLLNLSI DEVNKKLISN EGAIPNIIEI LENGNREARE NSAAALFSLS MLDENKVTIG
501: LSNGIPPLVD LLQHGTLRGK KDALTALFNL SLNSANKGRA IDAGIVQPLL NLLKDKNLGM IDEALSILLL LASHPEGRQA IGQLSFIETL VEFIRQGTPK
601: NKECATSVLL ELGSNNSSFI LAALQFGVYE YLVEITTSGT NRAQRKANAL IQLISKSEQI

Arabidopsis Description

PUB15U-box domain-containing protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q681N2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.